Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1206 ATGGAGAAAAAAATTGTGATGCAAAAGTACGAGATTGGACGCTACCTTGGGCAAGGCAATTTCGCCAAAGTTTACCATGCAAGGAACTTGAAGACAGGCCAGAGCGTGGCCGTGAAAGTTATCAACAAAGAGATGATGATGATGAAGGAGGGTATGAAGGATCAAATCAAGCGCGAAATCTCAGTGATGCGCCTTGTGAGGCACCCCAACATTGTGCAGCTGTACGAGGTCATGGCAACCAAGACAAAGATATATTTTGCAATGGAATTGGTGAAAGGTGGCGAACTTTTTCATAAAGTGTCCCGAGGAAGGTTGAAGGAGGATGTGGCAAGAAAATATTTTCAGCAGCTCATTGATGCTGTTGATTACTGCCACAGCTTAGGGGTGTGTCATCGTGATCTCAAGCCAGAGAACCTTCTTCTTGATGAGAATGGGGATCTCAAAATTACGGATTTTGGTTTGAGCGCATTGGTTGAATCCAGAAAGAAGGATGGCCTTCTTCACACAATATGTGGAACTCCAGCCTACGTTGCTCCTGAGGTGATAAAGAATAAAGGATATGATGGAGCCAAGACAGATATATGGTCTTGTGGAGTGATTCTCTATGTTCTTTTGGCAGGTTTTGCTCCTTTCAACGACAGGAATTTGATGGAGCTGTATAAGAAGATTATCAAAGCAGATTGCCAATTCCCAAAATGGTTTTCTACAGATGTAAAAAGACTTATTTATAGGATCCTTGATCCGAATCCAACGAGTAGAATTAGTATTGCTAAGATTGTGCAAAGTCGTTGGTTTAGAAAGGGGTACGTGCAGAGTGTAGAATATCAGCTGCCACCGTTGTTCCCCAGAAATGGTGATGATATCTTGGATGTTCAGGTTGTATTTGATTCATCAGATTCAGATGGCAGTCCAATCTCAACTAAAAAAGAAAGCCCCTTGAAGCTATATCAATTCAATGCATTTGATTTGATATCACTATCATCAGGTCTTGATCTTTCTGGTTTGTTTGAAAATGATCAGAATGAAAGACGACTTACGAGATTTACTACCAGAGAAGGACCTTCTACTGTTGTATCAATGCTTGAAGAGATAGCACAGATAGATGATAAATTTAAAGCCTTGAAGAAAGATGGGATTGTTAGATTGGAGGGATGCAAATCAGGAATAAAAGGCCAACTCATCATAGATGCAGAAATTTTTGAAGTTACATCTTCCTTGCATGTTGTCGAGGTGACAAAAGTAGCTGGAAACACATTGGAATATTTAAAATTCAGGGAACAGTACCTCAAACCTTCTTTGAATGAAATTATTTAA 1314 0.4011 MEKKIVMQKYEIGRYLGQGNFAKVYHARNLKTGQSVAVKVINKEMMMMKEGMKDQIKREISVMRLVRHPNIVQLYEVMATKTKIYFAMELVKGGELFHKVSRGRLKEDVARKYFQQLIDAVDYCHSLGVCHRDLKPENLLLDENGDLKITDFGLSALVESRKKDGLLHTICGTPAYVAPEVIKNKGYDGAKTDIWSCGVILYVLLAGFAPFNDRNLMELYKKIIKADCQFPKWFSTDVKRLIYRILDPNPTSRISIAKIVQSRWFRKGYVQSVEYQLPPLFPRNGDDILDVQVVFDSSDSDGSPISTKKESPLKLYQFNAFDLISLSSGLDLSGLFENDQNERRLTRFTTREGPSTVVSMLEEIAQIDDKFKALKKDGIVRLEGCKSGIKGQLIIDAEIFEVTSSLHVVEVTKVAGNTLEYLKFREQYLKPSLNEII* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1206 437 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165
Vra10g1206 437 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 4 437 - -
Vra10g1206 437 Gene3D Transferase(Phosphotransferase) domain 1 1 312 - -
Vra10g1206 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vra10g1206 437 ProSiteProfiles Protein kinase domain profile. 10 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1206 437 Pfam NAF domain 318 366 IPR004041 GO:0007165
Vra10g1206 437 Gene3D Kinase associated domain 1, KA1 314 437 - -
Vra10g1206 437 CDD CIPK_C 319 434 - -
Vra10g1206 437 Pfam Protein kinase domain 10 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1206 437 SMART serkin_6 10 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1206 437 PANTHER - 4 437 - -
Vra10g1206 437 SUPERFAMILY Protein kinase-like (PK-like) 6 316 IPR011009 -
Vra10g1206 437 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1206 Vra-Chr10 17666260 17671133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1206 5 437 CBL-interacting serine-threonine protein kinases AT5G45820 59.677 0.0 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra10g1206 Pkinase 3.3e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1206 K07198 - gmx:100807927 683.715