Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1204 ATGAAGCCGTTTTCCACGTTCTTCATTCTCCTTTCACTGGTTGCGCTCGTGGACTCTAAATATTATTCATGCAAAAAAGAAGACCGGGAGCTTGTGTCAAAGGCGTTTCAATCTGTGTCTGGATTCAACTCTTCCTGGTTCCAAAGCGCTTCTAATTGTTCAAATGCTGATGTTATTAAAGGATTAAATCTTTCGTTCAGGAACCTAAGAGGAAGCATTTCGTGGAAGTATCTGAGGAACATGTCCAAGTTGGAGGTTCTAGATCTGTCTGGGAATTTCTTACAAGGGCAGGTACCAAACTGGTTGTGGACAAGCTCATCCTTATTGGTAGTGAACCTTTCCCAGAACAACTTCGGAGGGAGCATTAACCCCACTTTCCAAAACGGTTCCTTTTCATCGCTGAAAAATCTCAATCTCTCATACAACAGGTTCACCAACCAGCTTCACCTCTCTGTTTTTTCAAACCTTGAAAGCCTCGACCTTTCACACAATAACCTCAGAACTTTACCTTTGGGGTTCCAAAACCTCACCAATCTACACCACCTTAATCTCTCCAACTGCAACATCAAAGGCAGCGTAAAACCCATTTCCACCCTAACCTCACTATCCTTCTTGGACCTTTCGAACAACTCTTTGAACGGTAGCTTCCCCTCGGATTTCCCTCCCTTGAAGACCATAAAATTCTTGAACATCTCTCACAACAACTTTAAAACATCCACCGCATTAGACAGATTCAAAAAGTTCGGCAAATCGGCGTTCATTCACGCTGGTAACAACTTCAGCTACACCGCATCCAAAACCCCAAAGCTAGGTGCAACCTCGACATCAGCTTCAACTTCAACCCCACCACACAAACAGTCCCACCACATCCAGGCGGAGAAGAAGAGGCCAAGAGAAAAGCAAAAGTCAAAACGGAAACCAAGAAGCATGATTGCGGCCCTGTCGTGTGCCTCGGCACTCGTGGTTGTCGGATTGTGCATGTGCGTTGTGTGGCGTTGCAGAAGGAAGAGGCAACTGGCAAAAAGGAACAAGTGGGCGATCTCAAAACCGGTCCCAGTGAACGTGAAGATGGAGAAATCGGGACCCTTCGCATTCGAGACAGAATCAGGGACATCCTGGGTGGCTGACCTGAAAGAACCCTCTTCCGCACCCGTGGTCATGTTCGAGAAGCCTCTCATGAACCTCACCTTCGTGGACCTCATCGCTGCCACGTCACATTTTGGCAAAGACTCTCTCCTAGCTGAGGGCAGGTGTGGGCCCGTGTACCGCGCTGTCTTAACCGGAGACATCCACGTGGCAATCAAAGTCATCGAAAACGCCAGAGACGTCCATCATGATGACGCTGTCGCTCTCTTCGTTGACCTTTCCCAACTCAAACACCCCAATCTCTTGCCCCTCTCCGGTTACTGTATTGCAGGTAAGGAGAAGCTGGTGCTGTACGAGTTTATGTCCAACGGAGATTTGGGTAGGTGGTTGAAGGAACTACCAGCAGGGGAGACTAACGTCGAGGATTGGAGCGGTGACACATGGGAGATTATTCAAAACGGCGCGGTTTCTCGACCCTCGCCGCCGGAAAAGATGGGCTGGCAAATACGCCATCGTATAGCGGTGGGCGTGGCGCGTGGGTTGGCGTTTCTGCACCACGCGGGGTCAAGGCCCGTCGTACACGGGCATCTCGTGACCTCCAATGTCCTTCTCGGCGACGACTTCGAGCCGCGAATCGCGGATTTCGGGTTCCGGAAGTTTGGAAGGGAGAGCGCTGCTGCCGCGACGAATTGCTCGACGGAGACGGATGTTTACTGCTTTGGTGTGGTGCTTATGGAGCTTCTGACGGGGAAGGGCGGCACGGCGGAGACGGTGGTTTGGGTGAGGAAGGCGGTAAGGGAGGGACACGCTGTGAAGGCGCTTGATGAGAGGCTTAAACTCGGCAGCGGCGGCGATTCGGAGAGTGAGATGGTGGAGAGCCTCCGAGTAGCGTATTTGTGTACGGCTGAGTCACCCGGGAAGAGGCCCAGCATGCAGCAGGTATTGGGCCTGCTGAAAGATATTCACCCGAGTCAGGGACTGGACTGA 2073 0.5128 MKPFSTFFILLSLVALVDSKYYSCKKEDRELVSKAFQSVSGFNSSWFQSASNCSNADVIKGLNLSFRNLRGSISWKYLRNMSKLEVLDLSGNFLQGQVPNWLWTSSSLLVVNLSQNNFGGSINPTFQNGSFSSLKNLNLSYNRFTNQLHLSVFSNLESLDLSHNNLRTLPLGFQNLTNLHHLNLSNCNIKGSVKPISTLTSLSFLDLSNNSLNGSFPSDFPPLKTIKFLNISHNNFKTSTALDRFKKFGKSAFIHAGNNFSYTASKTPKLGATSTSASTSTPPHKQSHHIQAEKKRPREKQKSKRKPRSMIAALSCASALVVVGLCMCVVWRCRRKRQLAKRNKWAISKPVPVNVKMEKSGPFAFETESGTSWVADLKEPSSAPVVMFEKPLMNLTFVDLIAATSHFGKDSLLAEGRCGPVYRAVLTGDIHVAIKVIENARDVHHDDAVALFVDLSQLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLKELPAGETNVEDWSGDTWEIIQNGAVSRPSPPEKMGWQIRHRIAVGVARGLAFLHHAGSRPVVHGHLVTSNVLLGDDFEPRIADFGFRKFGRESAAAATNCSTETDVYCFGVVLMELLTGKGGTAETVVWVRKAVREGHAVKALDERLKLGSGGDSESEMVESLRVAYLCTAESPGKRPSMQQVLGLLKDIHPSQGLD* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1204 690 MobiDBLite consensus disorder prediction 271 286 - -
Vra10g1204 690 SUPERFAMILY L domain-like 54 239 - -
Vra10g1204 690 Gene3D Phosphorylase Kinase; domain 1 367 482 - -
Vra10g1204 690 Gene3D Ribonuclease Inhibitor 131 308 IPR032675 -
Vra10g1204 690 ProSiteProfiles Protein kinase domain profile. 407 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1204 690 PRINTS Leucine-rich repeat signature 156 169 - -
Vra10g1204 690 PRINTS Leucine-rich repeat signature 199 212 - -
Vra10g1204 690 Gene3D Transferase(Phosphotransferase) domain 1 515 688 - -
Vra10g1204 690 MobiDBLite consensus disorder prediction 271 307 - -
Vra10g1204 690 SMART LRR_typ_2 199 222 IPR003591 -
Vra10g1204 690 SMART LRR_typ_2 153 175 IPR003591 -
Vra10g1204 690 SMART LRR_typ_2 81 105 IPR003591 -
Vra10g1204 690 ProSiteProfiles Leucine-rich repeat profile. 178 200 IPR001611 GO:0005515
Vra10g1204 690 SUPERFAMILY Protein kinase-like (PK-like) 384 681 IPR011009 -
Vra10g1204 690 Pfam Leucine Rich Repeat 83 101 IPR001611 GO:0005515
Vra10g1204 690 Pfam Protein tyrosine and serine/threonine kinase 411 582 IPR001245 GO:0004672|GO:0006468
Vra10g1204 690 ProSiteProfiles Leucine-rich repeat profile. 155 177 IPR001611 GO:0005515
Vra10g1204 690 PANTHER KINASE, PUTATIVE-RELATED 3 690 - -
Vra10g1204 690 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 690 - -
Vra10g1204 690 Pfam Leucine rich repeat 133 189 IPR001611 GO:0005515
Vra10g1204 690 Gene3D Ribonuclease Inhibitor 31 130 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1204 Vra-Chr10 17639000 17642311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1204 58 683 Receptor kinase-like Gene Family AT5G07280 30.226 2.46e-69 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vra10g1204 PK_Tyr_Ser-Thr 1.5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1204 - - gmx:100778920 1142.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1204 10 17639000 17642311 Vra10g1204 10 17639000 17642311 ECH