Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1202 ATGGCTGAGGATAAGGAGATGTCCTCCTCCGTCGTCAATGACAATGATTCCGTCACTGGTCACATCATATCCACAACTATTGGAGGCAAAAACGGGGAGCCCAAACAGACTATTAGTTACAAGGCCGAACGAGTGGTAGGAACTGGCTCGTTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCCATTAAAAAGGTTTTACAGGACAGAAGATACAAGAACCGTGAACTACAGTTAATGCGAGTCTTGGATCATCCAAATGTGATCTCACTGAAACATTGTTTCTTCTCAACTACAAGTACAGATGAACTTTTTCTAAATTTGGTGATGGAATATGTTCCGGAGTCCATGTATAGAGTCTTAAAGCACTATAGCAATGCTAATCAAAGAATGCCTATCATCTATGTGAAACTTTACATGTACCAGATTTTCAGGGGATTGGCATATATTCACACTGTTCCCAAAGTTTGTCACAGAGACTTGAAGCCTCAAAATATTCTGGTGGATCCTCTTACACACCAAGTAAAGCTATGTGATTTTGGAAGTGCCAAAGTTCTAGTGAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGTGCCCCAGAACTTATATTTGGTGCTACAGAGTATACAACTTCTATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTTCTTCTGGGCCAGCCATTATTTCCAGGAGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGGTGCTTGGCACACCAACTCGAGAGGAAGTACGCTGTATGAATCCCAGTTACAATGACTTTAGATTTCCACAGATAAAAGCACATCCATGGCACAAGATTTTTCACAAAAAGATGCCTCCAGAAGCTATTGATCTGGCATCTCGGCTTTTGCAATACTCTCCAAGTCTTCGGTGTACTGCGCTTGAAGCATGCGTACATCCTTTCTTTGATGAACTACGAGAACCCATTGTTCGCCTGCCAAATGGCCGTCCATTTCCTCCTCTATTTAACTTCAAACAGGAATTAACCGGAGCGTCTCCAGAGCTTGTTAACAAGTTGATACCTGACCATGTGAAGCCACAAATAGGAATGCAATTTGTTCATCCAATAGGATCATGA 1143 0.4173 MAEDKEMSSSVVNDNDSVTGHIISTTIGGKNGEPKQTISYKAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVLDHPNVISLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYSNANQRMPIIYVKLYMYQIFRGLAYIHTVPKVCHRDLKPQNILVDPLTHQVKLCDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPSYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACVHPFFDELREPIVRLPNGRPFPPLFNFKQELTGASPELVNKLIPDHVKPQIGMQFVHPIGS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1202 380 SMART serkin_6 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1202 380 Gene3D Transferase(Phosphotransferase) domain 1 120 367 - -
Vra10g1202 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Vra10g1202 380 CDD STKc_GSK3 35 327 IPR039192 -
Vra10g1202 380 PANTHER BNAANNG31110D PROTEIN 1 374 - -
Vra10g1202 380 SUPERFAMILY Protein kinase-like (PK-like) 39 349 IPR011009 -
Vra10g1202 380 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 374 - -
Vra10g1202 380 Pfam Protein kinase domain 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1202 380 Gene3D Phosphorylase Kinase; domain 1 25 119 - -
Vra10g1202 380 ProSiteProfiles Protein kinase domain profile. 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1202 380 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1202 Vra-Chr10 17626877 17631463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1202 44 324 MAP Kinase Gene Family AT3G59790 35.959 4.83e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vra10g1202 Pkinase 1.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1202 K14502 - gmx:100779909 743.421