Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1201 ATGGATGATGCCAAAGTGATTGCTTGTTTAGCTTTCCTCTTTCTGTGTTATCAGGTGCTTCTTGTAGAGGGCACTGATAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTGCTTTGATGTCCATGAAGAGTAAGATGTATGACGAGTTTAATGCTATGGATGGTTGGGATATTAATTCGGTTGACCCCTGTACTTGGTCCATGGTTGGTTGCTCCGCCGAGGGTTATGTGGTTTCTCTGGAAATGGCCAGTGCGGGTTTATCCGGGACGATATCCTCAGGAATTGGAAATTTGAGCCACCTTCATACATTGCGGCTCAGCAAAAATAAACTATCTGGACAGATCCCTGAGCTTGTTGCTAATCTCACAGACCTTTCATTCTTGGATTTGTCATTCAATAATCTCAGTGGTCCCACTCCACAAATTTTAGCGAAAGGTTATAGTATTTCAGGGAACAGCTTCCTCTGCACCTCTTCTTCTCAAATTTGTATGGGCTTCTCAAAACCAGTTAATGATACAGGGTCATCTCAGTCGACTGGTGGTCATCACCAAAGGGTGCTTGCTGTTGTTATTGGCTTCAGTTGCACGTTTGTAATTTCAGTGGTGCTTCTTGTATTTTGGTTGCATTGGTACAGATCAAACATTCTGTACACATCTTATGTGGAGCAAGATTGTGAATTTGATATTGGCCATCTGAAGAGGTTCTCCTTCCGTGAATTGCAAATTGCTACTGGAAGTTTCAATTCAAAAAATATCCTAGGGCAAGGTGGTTTTGGTGTTGTCTACAAAGGATGCCTTGCGAATAAAATGTTAGTGGCAGTAAAGAGGTTGAAAGATCCCAACTATACTGGAGAAGTGCAGTTTCAAACAGAAGTTGAGATGATTGGCTTGGCAGTCCATCGAAACCTCTTGCGCCTTTATGGATTCTGTATGACACCGGATGAAAGGTTACTTGTTTATCCTTACATGCCCAATGGCAGTGTTGCTGATCGCTTGAGAGAGACTTGCCGTGAAAAGCCATCATTGGACTGGAACAGGCGAATGCGCGTTGCTCTTGGGACAGCACGCGGGCTTCTATACTTGCATGAACAATGCAATCCAAAAATAATCCACAGGGATGTTAAGGCTGCAAACATTTTGTTAGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACATGTAACTACTGCAGTACGAGGGACAGTAGGTCACATTGCTCCAGAATATCTCTCAACTGGACAGTCATCTGAAAAAACAGATGTTTTTGGATTTGGCATATTACTTTTGGAGCTCATAACAGGACATAAGGCACTTGATGCAGGAAATGCTCAGGTCCAAAAGGGAATGATTCTTGATTGGGTTAGAACATTATATGAGGAGAAACGGGTGGAAGTTTTAGTGGATAGGGATCTGAGGGGATGTTTTGATCCTGTAGAGTTGGAGAAAGCAGTGGATTTGTCTCTACAGTGTACTCAGTCACTTCCCACTTTGCGGCCAAAGATGTCAGAAGTTCTGAAGATTCTAGAAAGTATGGTCGGACAGTCAATGCAGGCAGAGGAGTCACAAGGAGTGACTAACGTATACGGTGAAAGGACTTGCAGTTTCTCACAAAATTATAGTGATGTTCACGAAGAACCTTCCTTTATTATTGAAGCCATTGAGCTCTCTGGACCTCGCTGA 1719 0.4316 MDDAKVIACLAFLFLCYQVLLVEGTDSLLSPKGVNYEVAALMSMKSKMYDEFNAMDGWDINSVDPCTWSMVGCSAEGYVVSLEMASAGLSGTISSGIGNLSHLHTLRLSKNKLSGQIPELVANLTDLSFLDLSFNNLSGPTPQILAKGYSISGNSFLCTSSSQICMGFSKPVNDTGSSQSTGGHHQRVLAVVIGFSCTFVISVVLLVFWLHWYRSNILYTSYVEQDCEFDIGHLKRFSFRELQIATGSFNSKNILGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRETCREKPSLDWNRRMRVALGTARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDAGNAQVQKGMILDWVRTLYEEKRVEVLVDRDLRGCFDPVELEKAVDLSLQCTQSLPTLRPKMSEVLKILESMVGQSMQAEESQGVTNVYGERTCSFSQNYSDVHEEPSFIIEAIELSGPR* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1201 572 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 103 572 - -
Vra10g1201 572 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 108 - -
Vra10g1201 572 Gene3D Ribonuclease Inhibitor 33 165 IPR032675 -
Vra10g1201 572 ProSitePatterns Protein kinases ATP-binding region signature. 255 277 IPR017441 GO:0005524
Vra10g1201 572 SUPERFAMILY L domain-like 36 147 - -
Vra10g1201 572 SUPERFAMILY Protein kinase-like (PK-like) 233 528 IPR011009 -
Vra10g1201 572 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Vra10g1201 572 SMART serkin_6 249 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1201 572 Gene3D Phosphorylase Kinase; domain 1 219 324 - -
Vra10g1201 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 371 383 IPR008271 GO:0004672|GO:0006468
Vra10g1201 572 Gene3D Transferase(Phosphotransferase) domain 1 325 538 - -
Vra10g1201 572 Pfam Protein kinase domain 250 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1201 572 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 108 - -
Vra10g1201 572 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 103 572 - -
Vra10g1201 572 ProSiteProfiles Protein kinase domain profile. 249 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1201 Vra-Chr10 17619587 17623971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1201 42 572 Receptor kinase-like Gene Family AT5G45780 64.200 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vra10g1201 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1201 - - ccaj:109812711 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1201 10 17619587 17623971 Vra10g1201 10 17619587 17623971 ECH