Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1200 ATGGATCAAAACAGAAGCGAAGAAAGAGGTGGGATACTGGGTCCGGTTCGTGAAGTGGTAGATGGGAATTTGAGTCATTTGGTTGAAGGGGTAGTTATTGATGCAGTAGATGGGAACGACTTGGGTGGCAGAGTTGGTATAAGGGGAGAAGCTGGAACTTCAAGAGAGGTGGGTAAGGATTTGGGATCTGAAAAGGAGCTAAAGGAGGAGCTTGAGGAAGTTAAGGGTCAGGACAAGCATGGTGAAGAAAATATCAGTGATTATAAATTGCTTGGGGTTGATCAGGGAACTAGTTATAATCCAAACCATTTGGTTAATCAGGAAGTGATTGAAACTGTGGTTGTAATCGAGTCTTTTGAGACTGACTATGTCAACGAGAATAATAGGAAGTTGGAAGCAGAAGTTAATGAATCGGAGTTGAACTTTACATCCATGAAAGTACCAGAAGGGGCGTCTGAAACTGATAAAAATTCATGTGTGATTGATATAAAATGCAGCAGCCGCAAAAAGGTTTCTGAGAATTCTGAAGGTGAACAGATTTGTAGGATTTGCCATCTGGCTTCTGTGCAGCCATCGGATGAAAATGAAGCAACCGTTGGCCCTGCTGCTAGTAGTGCTACGTGTTCAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCACATGTTCATTGTGCTGAGGCGTGGTTCAAGCTTAAGGGGAACAGGTTATGTGAAATATGTAGTGAGACTGCAACAAATGTTTCGGGTGTTAGTAATTATGAATTTATGGAAAAATGGAATGAAAGAAGGTTCATGGAAGACGGTGGTAGCTCATCCCGCAGGTTTGGTGGATGCTGGCGAGGACAACCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCATTTGTTCTGCCATGGTTTTTTCGTGTAAATGTGTTCTAG 939 0.4249 MDQNRSEERGGILGPVREVVDGNLSHLVEGVVIDAVDGNDLGGRVGIRGEAGTSREVGKDLGSEKELKEELEEVKGQDKHGEENISDYKLLGVDQGTSYNPNHLVNQEVIETVVVIESFETDYVNENNRKLEAEVNESELNFTSMKVPEGASETDKNSCVIDIKCSSRKKVSENSEGEQICRICHLASVQPSDENEATVGPAASSATCSDLIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICSETATNVSGVSNYEFMEKWNERRFMEDGGSSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNVF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1200 312 ProSiteProfiles Zinc finger RING-CH-type profile. 173 252 IPR011016 GO:0008270
Vra10g1200 312 PANTHER ZINC FINGER, RING-CH-TYPE 1 312 - -
Vra10g1200 312 SMART ringv_2 180 246 IPR011016 GO:0008270
Vra10g1200 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 312 - -
Vra10g1200 312 SUPERFAMILY RING/U-box 176 248 - -
Vra10g1200 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 257 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1200 Vra-Chr10 17612601 17615740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1200 161 311 C3H Transcription Factor Family AT5G05830 39.744 8.31e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1200 - - vra:106775190 618.231