Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1193 ATGAAGAGTAGTTGTGATGAATGGAAGCCTTTTATAGTAATGATAGCAATTGATTTTTCTTTTGCTGTAGTGAATATTCTTCTTAAGAAAGTCCTTGAAAAGGGGGTGAACCATTTGGTTTTTATCACATACCGGTTGACAATTGCTACCATTTTCATAGCCCCCGTCGCCTACTTTAAAGAAAGAAACGACAGACCAAGGCTCACATTTCGAATTTTATGTTACCTTTTCTGCAGTGCCATTGTTGGGGCATCGGTCACTCAATACTTTGTCCTTGTGGGGATACAATATACTTCTGCTACCTTCTCTTGTGCTTTCATCAACATGGTGCCAGTGGTCACATTCATGATGGCATTACCTTTTGGATTAGAGACTGTGAAAATCAAATGCAACAGTGGGAGAGCTAAGGTTCTCGGTTCATTGGTGTGCATAGGTGGCGCATTGATGTTGACACTTTACAAAGGAAAGCCACTGGTTAATTTTTCTCACTACGAATCCGCAGCTTCTACTGTGGTCAAGAGTTCTGCAGTGAATATATATTCAACAAAGACAACGGAGAGATGGACTATTGGTGTAATAGCCATGGTTATAGGAACCATCTTTTGGTCTTCTTGGTATATTTTACAGTCAAAAATAAGCAAGAGATATCCATGCCAGTATTCTAGCACAGCCATCATGAGCTTCTTTGGAGCCCTTCAATCAGCTGTTATTTGCTTGTGCACTGACCACAACTTGTCCATTTGGGTCCTCAAGGGAAAGATACAAATCATTGCTTTTCTATATTCTGGGATGATAGGATCAGGTTTATGTTTTGTGGGAATGTCATGGTGTGTGAAGAAGAGGGGTCCTGTCTTTACTGCAGCATTCAGTCCTCTTGTTCAGATAATAGCAGCAATGATTGATATACCAGTCTTGCATGAACAGCTCCATCTTGGAAGTGTGATGGGATCCATCTTGGTGATTATTGGATTATACATTCTTCTATGGGGTAAGAACATGGATATTAAGAATCGTGTGAGAAAGTTAGTCCAAGAAGCTGAAGAAACCAAGGAACAAGAGCCGCAGCCGCAAATACAACAGTTGACAGTGTATGTTCACACAGAATCGTGTAATTCGTAG 1119 0.4057 MKSSCDEWKPFIVMIAIDFSFAVVNILLKKVLEKGVNHLVFITYRLTIATIFIAPVAYFKERNDRPRLTFRILCYLFCSAIVGASVTQYFVLVGIQYTSATFSCAFINMVPVVTFMMALPFGLETVKIKCNSGRAKVLGSLVCIGGALMLTLYKGKPLVNFSHYESAASTVVKSSAVNIYSTKTTERWTIGVIAMVIGTIFWSSWYILQSKISKRYPCQYSSTAIMSFFGALQSAVICLCTDHNLSIWVLKGKIQIIAFLYSGMIGSGLCFVGMSWCVKKRGPVFTAAFSPLVQIIAAMIDIPVLHEQLHLGSVMGSILVIIGLYILLWGKNMDIKNRVRKLVQEAEETKEQEPQPQIQQLTVYVHTESCNS* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1193 372 PANTHER WAT1-RELATED PROTEIN 10 351 IPR030184 GO:0016021|GO:0022857
Vra10g1193 372 Coils Coil 332 352 - -
Vra10g1193 372 PANTHER WAT1-RELATED PROTEIN 10 351 - -
Vra10g1193 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
Vra10g1193 372 Pfam EamA-like transporter family 190 328 IPR000620 GO:0016020|GO:0016021
Vra10g1193 372 Pfam EamA-like transporter family 11 150 IPR000620 GO:0016020|GO:0016021
Vra10g1193 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 253 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1193 Vra-Chr10 17562356 17564710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1193 8 262 Nodulin-like Gene Family AT3G30340 49.804 4.20e-88 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1193 - - gmx:100803670 666.766