Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1192 ATGGGAGCAGTGAGTGATGCAAACCGTACCAGAAAGAAGTCATCATCAAGAGGGCACCACAGGTTTGTGGGGGTTCGACAAAGGCCATCAGGGAGATGGGTGGCAGAGATCAAAGACTCTCTACAGAAGGTCAGGCTTTGGCTTGGAACATTTGACACGGCTGAGGATGCAGCTAGGGCATATGACAATGCTGCTCGAGCCTTGAGAGGTGCCAATGCTAGAACCAACTTTGAATTGCCCGAAGCAACTTCTGGTGATGCTTCTAAGCGTGGTGATGGCGGTGGTTCAACCTTTGTGCCCAATTGCTCTGAACCCTTTTCTTTTGAGGATGTCAATGAGCCAGGTGAAGATGCTGAAGGCCTTCTTGGTGCACTTAAGGCCAAGCTGCTTGATGGAAAGAAAGGAAAGTTTCACTTTCCATTTCTTCCTAATAGTGCTGCTTCCCCACTTGTTCAATCTGGCTGGGTTTCAACATCAACTCAGAATGTTTGTTCCGCGGAGAAAGATTTATTGTTACCATCATCATCAGCCCGTAATACTGTCCTCTCAAGTATGAATGGAACTGGAGCCAACCCTTTACTTGGTGTTACGAGTACTTTAGCAACATCAAACACTTGTTCAAAGAGTATGGTTATCCCAAATCATGATCATGAAGGTTCTGAAGGAAGAAGTTCTAGAGTCGACTCTCATCAACTTTGTCAAACCCCAACTGAGGCAGCATGGTTCAATGAAGTGGCGTATGAGTTGCCTTGGCCTACTCAATTTATGAGCCAAGTTCCTGATAATAATAATAACCTTCTTGCATCTGCAGCCACCTTGGCATGGCCACTTTCTGGGGTGATTGAGTCTACTATTGATATGGCATGCCCAGATCAAGGGACATCAAGTTGCAATAAAAGTGGCCAAATGATGAATATGGTGAGCATGCAGTTACCTCTAGTGGGTGGTGCAACTGAAGGGCTTTGGACATTGGAACAACAACAATTTGTGCAATGTGAGAACAACAGTTGGTTTAGTTATAATGGCTCTTGGGATCCTCTCCTTTATATGCCTTCCGAGCTAGCTTGA 1068 0.4551 MGAVSDANRTRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDNAARALRGANARTNFELPEATSGDASKRGDGGGSTFVPNCSEPFSFEDVNEPGEDAEGLLGALKAKLLDGKKGKFHFPFLPNSAASPLVQSGWVSTSTQNVCSAEKDLLLPSSSARNTVLSSMNGTGANPLLGVTSTLATSNTCSKSMVIPNHDHEGSEGRSSRVDSHQLCQTPTEAAWFNEVAYELPWPTQFMSQVPDNNNNLLASAATLAWPLSGVIESTIDMACPDQGTSSCNKSGQMMNMVSMQLPLVGGATEGLWTLEQQQFVQCENNSWFSYNGSWDPLLYMPSELA* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1192 355 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 2 350 - -
Vra10g1192 355 MobiDBLite consensus disorder prediction 1 25 - -
Vra10g1192 355 MobiDBLite consensus disorder prediction 79 99 - -
Vra10g1192 355 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 350 - -
Vra10g1192 355 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Vra10g1192 355 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Vra10g1192 355 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Vra10g1192 355 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Vra10g1192 355 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Vra10g1192 355 SUPERFAMILY DNA-binding domain 22 78 IPR016177 GO:0003677
Vra10g1192 355 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Vra10g1192 355 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1192 Vra-Chr10 17555894 17556961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1192 9 77 AP2-EREBP Transcription Factor Family AT5G19790 67.143 1.95e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra10g1192 AP2 3.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1192 - - gmx:102661478 494.582