Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1190 ATGACTAGGGCTGTCCGTAGTAGGGTGCTTAAAGATGCCAATGGTGATATTAGTGATCATCTTCGCAACCACATCCATTTGACAAATTGCATTCATCTGAAGAACCATATGCACAAGAACAGCCCCATTCTGGCTGACAGGTCAATCATGAGAGACCTTGTTGTGCTTCAGAGATCGCGGTCTCTTCGAGACCCTTCTGCAAGTCCTCCATCATGGCACTCGCCTTCTGTGGTTGACATGCTTTTCAAAAGAGTTGAAAATGATGCGGCGTCTCAAGGGGGGAGAAGGTCTGTAGGTGTTGAGAGAAGGAAGGAAGGGAGAAGATTATCTGGAACTTCACCACCCTTGGTGAGTATAGCTTCATCAAGAGTTGCCCCAGGTGAGATTGGTAGGGGTACTGATGGGATAACGGCACCTAGTGAACGTAGCAGCAGGAGTGGAGTGGGAGATGGCAGGAGGGTTGGGAGAGAGGAATCTGGTAGGAGGAATGAAAAGCCTGACTTTTTGGATGTTAATCAAGAGGACCCTCTCAATCAAGCTGGGAAAAGTTTGGCTGAAGATGTTATTTCCAGGCATTCCGAGTCTAAAGATAGAAAGAGCAAACAGAGGGGCAAGAATGTTCGAGATTCTCAAGTGAAGACTCTTTCTGAGCAGCTGAATGATGTTCCTTTGGATTGTGATGATCTAGCATCAACAAATATTCATTTTCGTGGAAGGTTTCCTAGACAGGAGAAAATTATCGAGGAGGCAGATTCCCGGGTGCGCAGTAGTGGCAGTGGAATGAATAGGGGGAAAAGGCGTAAGTTTCGAAGTGCTCGAAGAACTCGTGTTGCCACAACATCAAGAGAAATTGGAGCTGAGAATGAACTTTCTGTGGCTTCCAACTCAATAGCTCAGGCTTCAGCCCACCAGAAATATCACTTGGAGGGGGCTGATGAGTTTGCAGATGATAATGTTACTAGGGCTCCGAAAAATGGGTGTGGCATTCCATGGAATTGGTCCAGAATTCATCACAGGGGTAAAACATTCCTTGACATGGCTGGAAGAAGTTTGTCTTGTGGTTTATCAGACACTAGGTTGAAGAAAGGGACATTTGCTGACAATGGAAGACATATTTCTGAGATGCCTGTGGCATCTGAGCATTCGAGCTCATATACGAAGTCTGATGCAGAGGCACTGCCCTTGCTAGTTGAGGCATCTGTGTCTCACGCAAGCACTGAAAATGCTTGTTGGGATCATGACTATTCTGGGGAACTAGGTCTTTTTGGTGATAACTTATTCAAGCGTGATATTGATTCTGATCTCGCATCCGAAGCTAGATCTGGTGATCAGCGTAAGTTGAGAGGGAATCGCCACAGTCGACACCAAAGTTTAACACAAAAGTACATGCCTCGAACCTTTAGAGATATGGTTGGGCAAAATTTAGTGGCACAAGCTCTTTCTAATGCAGTAATGAGGAGAAAAGTTGGATTGTTGTACGTGTTCTATGGTCCCCATGGCACTGGAAAAACTTCTTGTGCACGCATATTTGCAAGAGCTCTGAATTGTAATTCTTCAGAACACCCAAAACCTTGTGGATTTTGCAATTATTGCATAGCGCATGATATGGGCAAGAGTAGAAATATAAAGGAAGTAGGTCCAGTTAGCAATTTTGACTTTGAGAGCATCATGGACCTACTGGACAATATGATTGTTTCTCAGCTTCCATCACATTACAGAGTGTTTATTTTTGATGACTGTGATACTCTGTCGACGGATTGTTGGAATGCTATATCGAAGGTCATTGACCGAGCACCTAGACGTGTCGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTGAAGGATGCGGATATTATACATACTCTGCAGTGGATTGCAACCAAAGAAGGTCTAGAAATTGAGAAGGATGCCCTGAAACTGATTGCATCAAGGTCGGATGGATCTATGAGAGATGCTGAGATGACCGTTGAACAACTTAGTTTACTTGGACAGAGAATATCCGTTCCCCTTGTTCAGGAATTGGTAGGGCTAATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACCGTGAAGAATTTAAGAGTGATAATGGAAACCGGTGTGGAGCCATTGGCTTTAATGTCACAACTTGCTACAGTAATTACAGATATACTTGCTGGGACCTATGATTTCGCAAAAGAAAGGCGAAGAAGGAAGTTCTTCCGTCGACAACCATTGTCCAAAGAAGACATGGAAAAGCTGCGCCAAGCTCTGAAAACTTTATCTGAGGCTGAGAAGCAACTGAGGATGTCCAATGACAAGCTAACATGGCTGACAGCTGCTTTACTTCAGCTTGCTCCGGACCAGCAATATGTGTTACCAACATCATCTGATAATAGTTTTAACCATAGTCCGTTCACTCTAAAAGATGCAGATGCGAGAGAAGCTGCTAGACCGAGTGGTAATCCTGTTGACATTCCTAACAAAACTAGACGACTATCAATGGATGCTAGAATTGAAAATTTCCATGCTGGAAGCTCAGCAGATGGTCTGACAAGGGGTCTTGGTTCTGAGAAAAAGCGACACAGTGTGTCTGGTTTTACTCCTCAACATACACATTTCCCAGCCACTGATAAGATTAAGATAAATGAGAGGCAAATTTTGGGTAAAGGCCGGAAAGAAATTGGAGAGATATGGTTAGAGGTGCTTGAGAGAATACAAGTTCCTGGTCTGAAAGAGTTTCTGTTTAAAGAAGGCAAGCTGATCTCTGTTAGTTTTGGGGCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCATTTGACCAAATCTACTGCCGAGAAGTTCACAGGCCAAATCTTACAAGCATTTGAATCTGTCCTTGGATCTTCTATAACAATAGAAATTAGATGTGAGTCAGGCAAAGATGCTGGATCTGCTGTTCAACAGCCTGCTACTAATGATATTCTGTCTCAGATAAGAGACTTTAATGGTGTTGGTTCTCAAGCTCATCCAACATTAACTGATTCTGTTGAAAAAAGAAGGGGTGAAATTGTAGAAGAAGCATCTTCTCAAGTGGAGCACAAGACTAATGAGCAGCAGGTAGATGGTCATGGAACGTCTTACAGAAAATTAGAAGGTAAAAGTATAGGACAGACATCAGTTTCCCAAAACAAGGCAATCGTTAAGTCAGAGTTAGACCAAAAAAAGCTTATGGAGCAAAATCAAAGTCGAAGTCTTGTAAGAAGCAAAGTATCTCTTGCTCATGTAATCCAGCAAGCAGAAGGCCAGAGAAGTGGGTGGTCAAAACGTAAAGCAGTTTCTATTGCTGAGAAGCTTGAACAAGAGAATTTGAGACTGGAACCAAGATCAAGAAGCTTGCTATGCTGGAAAGCATCAAGAGCAACTCGGCGAAAGCTGTCACGGTTGAAAATTCGTAGCCGAAAACCACGTGCACTGCTGAATCTGGTCTCGTGTGGGAAATGTCTGTCTACAAAATCTCCGAGGTAG 3564 0.4327 MTRAVRSRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDMLFKRVENDAASQGGRRSVGVERRKEGRRLSGTSPPLVSIASSRVAPGEIGRGTDGITAPSERSSRSGVGDGRRVGREESGRRNEKPDFLDVNQEDPLNQAGKSLAEDVISRHSESKDRKSKQRGKNVRDSQVKTLSEQLNDVPLDCDDLASTNIHFRGRFPRQEKIIEEADSRVRSSGSGMNRGKRRKFRSARRTRVATTSREIGAENELSVASNSIAQASAHQKYHLEGADEFADDNVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSLSCGLSDTRLKKGTFADNGRHISEMPVASEHSSSYTKSDAEALPLLVEASVSHASTENACWDHDYSGELGLFGDNLFKRDIDSDLASEARSGDQRKLRGNRHSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCIAHDMGKSRNIKEVGPVSNFDFESIMDLLDNMIVSQLPSHYRVFIFDDCDTLSTDCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIHTLQWIATKEGLEIEKDALKLIASRSDGSMRDAEMTVEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFAKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPFTLKDADAREAARPSGNPVDIPNKTRRLSMDARIENFHAGSSADGLTRGLGSEKKRHSVSGFTPQHTHFPATDKIKINERQILGKGRKEIGEIWLEVLERIQVPGLKEFLFKEGKLISVSFGAAPTVQLMFSSHLTKSTAEKFTGQILQAFESVLGSSITIEIRCESGKDAGSAVQQPATNDILSQIRDFNGVGSQAHPTLTDSVEKRRGEIVEEASSQVEHKTNEQQVDGHGTSYRKLEGKSIGQTSVSQNKAIVKSELDQKKLMEQNQSRSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRATRRKLSRLKIRSRKPRALLNLVSCGKCLSTKSPR* 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1190 1187 CDD HLD_clamp_pol_III_gamma_tau 630 693 IPR045085 -
Vra10g1190 1187 Pfam DNA polymerase III subunits gamma and tau domain III 686 805 IPR022754 GO:0003887
Vra10g1190 1187 MobiDBLite consensus disorder prediction 146 171 - -
Vra10g1190 1187 MobiDBLite consensus disorder prediction 251 275 - -
Vra10g1190 1187 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 180 1154 - -
Vra10g1190 1187 MobiDBLite consensus disorder prediction 260 275 - -
Vra10g1190 1187 Pfam DNA polymerase III, delta subunit 473 630 - -
Vra10g1190 1187 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 456 804 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vra10g1190 1187 MobiDBLite consensus disorder prediction 88 213 - -
Vra10g1190 1187 MobiDBLite consensus disorder prediction 438 457 - -
Vra10g1190 1187 SMART AAA_5 489 630 IPR003593 -
Vra10g1190 1187 CDD AAA 471 630 - -
Vra10g1190 1187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 677 IPR027417 -
Vra10g1190 1187 Coils Coil 766 793 - -
Vra10g1190 1187 SUPERFAMILY post-AAA+ oligomerization domain-like 701 804 IPR008921 GO:0003677|GO:0006260
Vra10g1190 1187 MobiDBLite consensus disorder prediction 187 210 - -
Vra10g1190 1187 MobiDBLite consensus disorder prediction 867 889 - -
Vra10g1190 1187 PANTHER PROTEIN STICHEL-LIKE 3 180 1154 - -
Vra10g1190 1187 Gene3D - 448 627 IPR027417 -
Vra10g1190 1187 Gene3D - 631 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1190 Vra-Chr10 17503576 17509755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1190 456 754 Core DNA Replication Machinery Family AT1G21690 23.026 1.20e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1190 - - pvu:PHAVU_006G172900g 2149.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1190 10 17503576 17509755 Vra10g1190 10 17503576 17509755 ECH