Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1182 ATGAAGTGGGTAGGAAGAAATCATTCTTCAACTTCCTCTTCTTCTGTCTCTTCCTTCATTTCTCATGCATCTCCTTTCTCTTGGTTCTCCAAGTTCAAGAATATGAGAATCAATTCGGAGCCAAGTGCTGCAAAAATGAAGCAAAAGGCAAAGCCTAGTAGTTCACCTCAATATTTCTGTGAGATTGGAGATAGAAGATGTTGTGTAAAGAATGATGGTGATTTCTGTAGACAACGTTTAAACGAGGATGAGAAGAATGAAGATATTGATGAGAGTGTGATTCACTCCTCAAGTTGCTTTGGTGGTAGAAGGGATGTTAAAGGCACACCAGAGTTAAAGGAGAGGGATATTGGTCAAGGAGAAGAAAGAAAGTTGGTGGATGATGGGAAGGTTTCAAAGAAGATGGATGTGTACAATAGAGAAAAGGAATATGAAAACTTAAGGAAGAGATTTGAGAGGAAAGCAAAAAAGGCTTTTCAAGACCAACTCTTGACACTTGAAAGAGGATCAAGTAAAGCAGTGGAAAAAGATGTGTTGCAATTGGAATCACCTAGAACAATTTGCACCCCAAGAACACACGCTTTTTCTTCTTCAGCAATTTCAAGGAATCCCATCCTTGGAAATGTTATAGAAAATTTTGAGAAAAATGAAAGGCTGTCTCACAAGAAAATGAGTTCTGAGAGGCAGAACTTGAAACAAACTGAGGAGACGAAGGTAAAGACCAACAGGAATAAGCAATCACATCAACTCAACAGAGAACGTCAGAGGAGGAAACAAAAGCCGAGCTCTAGGGTCAAAATACATTCTCCAAGGATGGTTTCTAAGGTTGAAATTTGCAAAATAAAGGCCCTGGAAGACATGAAGAAAGCAAAACTAAAGACGAAGAAAGAAAAGGAGGAAATACCAGTATTAGAAAGCTTTGCTGTGATTAAGTCTTCAATAGATCCAATGCAAGATTTCAGAGACTCAATGATTGAGATGATCATAGAGAATCAGATTATTCAGCCAGAAGAAATGGAAGATCTTTTGGTATGTTATCTGACTTTGAATGCAGATGAATATCATGATCTCATCATCAAGGTGTTCAGGAAGGTATGGTTTGACATGAGCCAAGGTATTTTTGGGTATTAA 1131 0.3811 MKWVGRNHSSTSSSSVSSFISHASPFSWFSKFKNMRINSEPSAAKMKQKAKPSSSPQYFCEIGDRRCCVKNDGDFCRQRLNEDEKNEDIDESVIHSSSCFGGRRDVKGTPELKERDIGQGEERKLVDDGKVSKKMDVYNREKEYENLRKRFERKAKKAFQDQLLTLERGSSKAVEKDVLQLESPRTICTPRTHAFSSSAISRNPILGNVIENFEKNERLSHKKMSSERQNLKQTEETKVKTNRNKQSHQLNRERQRRKQKPSSRVKIHSPRMVSKVEICKIKALEDMKKAKLKTKKEKEEIPVLESFAVIKSSIDPMQDFRDSMIEMIIENQIIQPEEMEDLLVCYLTLNADEYHDLIIKVFRKVWFDMSQGIFGY* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1182 376 MobiDBLite consensus disorder prediction 220 249 - -
Vra10g1182 376 Pfam Transcriptional repressor, ovate 313 369 IPR006458 -
Vra10g1182 376 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 9 372 IPR038933 GO:0045892
Vra10g1182 376 MobiDBLite consensus disorder prediction 220 267 - -
Vra10g1182 376 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 307 369 IPR006458 -
Vra10g1182 376 MobiDBLite consensus disorder prediction 250 265 - -
Vra10g1182 376 ProSiteProfiles OVATE domain profile. 309 368 IPR006458 -
Vra10g1182 376 Coils Coil 224 251 - -
Vra10g1182 376 PANTHER TRANSCRIPTION REPRESSOR OFP4 9 372 - -
Vra10g1182 376 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1182 Vra-Chr10 17444914 17446311 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vra10g1182 Ovate 2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1182 - - gmx:102666239 476.092