Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1181 ATGATGGAGGAAGCTCAGGGCAATTCTAGTTCCTTGCCTCCATTCCTCAGTAAGACTTATGACATGGTGGATGATCCTTCCACCAATTCCATTGTTTCCTGGAGTGTCACCAATAAGAGTTTCGTTGTTTGGAACCCACCAGAGTTTTCAAGGGATTTGTTACCCAGATTCTTTAAGCACAGTAACTTCTCCAGTTTTATCAGGCAGCTCAACACTTATGGGTTTAGAAAGATTGATCCTGAACTATGGGAATTTGCCAATGAGGGTTTTGTGAGAGGTCAGCCACATCTTTTGAAGAATATTCATAGGCGCAAACCAGTTCATAGCCATTCTTTGCAGAATATTCAGGGTCAGGGATCTTCTTCAATGACTGAATCAGAACGGCAGAGTTTCAAGGATGAGATAAAGAAGCTTAAAGATGAAAAAGATCAAGTACTTCGGGAGCTAGAGAGGCACGAACAGGAGTGGAAAATGTATGAGGTACAACTACAATATTCAAATGATCGATTGGAACAGTTGGAAAAGAAGCAAGAAAATTTGGTTTCTTCTGTTTCTGAAGTGCTGCAGAAACCTGGGATTGCCTTAAATCTCTTGCCTCTGACAGAAAAAGGGGATAGAAAACGTAGGTTGCCAAGAAGTGGTATCTTCAGTGACGATGCTGGCATTGATGATCATATGGAAACTTCCTCTGTATTACCTGGGGTAAATGCAGAGGGTGCCTCTATTTTCGCCCCAAACATGGAGCGATTTGATCTACTTGAGTCGTCCATTATGTTTTGGGAGAATATTGCACATGATGTTCAAAGTCATGTGAACATGGATTTTGATGAAACGACAAGTTGTGCAGATAGTCCAGCTATATCTTCTGTGCAGCTGGAGGTTGAAGTTCAACCTAAGTCACCTGGAACCAACGTGAATTCTGAGTCCGCTGTAGCTGCTGTTTCTGATCTTGATGCATCAAAAGAACCACCTGTGGGAACAGTTTCTGTGGCTGCTGGTGTTAATGATATATTCTGGGAACGTTTCTTGACAGAGAATCCTGGTTCTGAGAATCAGGAAGTGCATTCTGAAAGGAAAGATTCTGATGGCAGAAGTAATGCCAAATTTTGGTGGAACATTAGGAATGTGAATAACCCTCCAGAACAGATGGGGCATTCTTAG 1161 0.4212 MMEEAQGNSSSLPPFLSKTYDMVDDPSTNSIVSWSVTNKSFVVWNPPEFSRDLLPRFFKHSNFSSFIRQLNTYGFRKIDPELWEFANEGFVRGQPHLLKNIHRRKPVHSHSLQNIQGQGSSSMTESERQSFKDEIKKLKDEKDQVLRELERHEQEWKMYEVQLQYSNDRLEQLEKKQENLVSSVSEVLQKPGIALNLLPLTEKGDRKRRLPRSGIFSDDAGIDDHMETSSVLPGVNAEGASIFAPNMERFDLLESSIMFWENIAHDVQSHVNMDFDETTSCADSPAISSVQLEVEVQPKSPGTNVNSESAVAAVSDLDASKEPPVGTVSVAAGVNDIFWERFLTENPGSENQEVHSERKDSDGRSNAKFWWNIRNVNNPPEQMGHS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1181 386 Gene3D - 7 105 IPR036388 -
Vra10g1181 386 Coils Coil 170 190 - -
Vra10g1181 386 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra10g1181 386 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra10g1181 386 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 2 367 - -
Vra10g1181 386 MobiDBLite consensus disorder prediction 368 386 - -
Vra10g1181 386 SUPERFAMILY "Winged helix" DNA-binding domain 10 104 IPR036390 -
Vra10g1181 386 MobiDBLite consensus disorder prediction 351 365 - -
Vra10g1181 386 Coils Coil 121 162 - -
Vra10g1181 386 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra10g1181 386 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 367 IPR027725 -
Vra10g1181 386 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra10g1181 386 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra10g1181 386 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra10g1181 386 MobiDBLite consensus disorder prediction 348 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1181 Vra-Chr10 17437499 17440426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1181 9 385 HSF AT4G18880 50.508 9.07e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra10g1181 HSF_DNA-bind 5.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1181 K09419 - gmx:100784280 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1181 10 17437499 17440426 Vra10g1181 10 17437499 17440426 ECH