Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1174 ATGTCGATGGTGGCTGATAATTCCGCAAACAGTGGAAACCAGCAGGTGGTTCTAAATGTGAACGGCGAAACCCCCAAAAAGTGTGATCCCTCAACGAACCAAGACTGTGTTCCTCTCTTGCAGAAGTTGGTAGCAGAGGTGGTGGGAACGTACTTTTTGATATTTGCAGGGTGTGCTTCGGTGGTGGTGAACCTTGACAAGGACAGAGTGATAACACAACCAGGGATTTCAATTGTTTGGGGACTCACTGTTATGGTTTTGGTTTACTCTGTTGGTCACATCTCTGGTGCTCATTTTAATCCTGCTGTAACCATTGCTCATGCTTCCACCAGAAGGTTTCCACTGAAGCAGGTACCAGCTTATGTGATAGCTCAGGTGGTTGGATCCACACTTGCCAGCGGAACTCTGAGACTTATATTCAATGGCAAGAATGACCATTTCGCAGGAACACTCCCCGCTGGTTCTGACTTGCAATCTTTTGTGATCGAATTCATAATCACTTTTTATCTCATGTTTGTCATTTCTGGAGTTGCCACCGATAACAGAGCGATTGGTGAGTTGGCAGGGCTTGCAGTTGGATCGACGGTACTGCTAAATGTGATGTTTGCCGGGCCAATCACAGGGGCATCGATGAATCCAGCAAGAAGCTTAGGGCCAGCAATTGTGCACAATGAGTACAGAGGAATATGGATATATCTGGTGTCAACAACTCTTGGAGCTGTGGCTGGTGCATGGGCCTACAATTTCATCAGATACACTAACAAGCCAGTGCGTGAAATCACCCAGAGTGCCTCTTTCCTCAAAGGTGGTGGTCAAGCCGACTGA 825 0.4715 MSMVADNSANSGNQQVVLNVNGETPKKCDPSTNQDCVPLLQKLVAEVVGTYFLIFAGCASVVVNLDKDRVITQPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAHASTRRFPLKQVPAYVIAQVVGSTLASGTLRLIFNGKNDHFAGTLPAGSDLQSFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHNEYRGIWIYLVSTTLGAVAGAWAYNFIRYTNKPVREITQSASFLKGGGQAD* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1174 274 TIGRFAM MIP: MIP family channel proteins 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra10g1174 274 Gene3D Glycerol uptake facilitator protein. 4 264 IPR023271 -
Vra10g1174 274 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Vra10g1174 274 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 5 269 - -
Vra10g1174 274 SUPERFAMILY Aquaporin-like 37 262 IPR023271 -
Vra10g1174 274 PANTHER AQUAPORIN NIP2-1 5 269 IPR034294 -
Vra10g1174 274 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra10g1174 274 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra10g1174 274 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra10g1174 274 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra10g1174 274 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra10g1174 274 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra10g1174 274 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra10g1174 274 Pfam Major intrinsic protein 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1174 Vra-Chr10 17369557 17371513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1174 37 274 Major Intrinsic Protein MIP AT5G37820 62.185 2.90e-102 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1174 K09874 - gmx:100812577 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1174 10 17369557 17371513 Vra10g1174 10 17369557 17371513 ECH