Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1169 ATGGGAGTTGCCAGTTTCTTTGTCTTCCTTTTTATTGCTCTAAGTTGCTTCCAATTGCTGACAGTTTCTGCATCAAAATTACCCCAAGAAGAAGTTGATGCCCTTAGAGAAATTGCGAGTGCGATGGGATCGGCATATTGGAAATTTGATGCTGATTCCTGCATTATTGAAATGGTTGGACTAACGCAAGAACCACCAACTGAATCAGAGAGGAACATTGGTTGTGACTGCAGTTTTGAAGACAGTACTGTCTGTCATGTTGTGACGATGACTCTCAAGCGGCTTAGTCTACCTGGCACACTCCCACCTCAACTGGCCAAACTACCTTTTCTCCGAGATGTAGATTTTGCTTACAATTGCTTCACCGGTTCAATTCCAGAGGAATGGGCTTCAATGAAATTAGCTTCGATAATGCTTGAAGCAAACCAATTTTCTGGTGCTGTTCCACCTGAGCTTGGGAAACTAATCAACTTGCAGACCTTGGTTCTGTCATCCAATCAATTGACTGGGAACTTACCACTTACACTTGCTGGGCTACAAAATTTGACAGACTTTAGAATAAATGATAACAATTTTAATGGAACAGTACCCAGTTTCATCCAGAGCTGGCAACATCTCCAGAGACTAGAAATGCATGCGAGTGGACTAGAGGGACCCTTCCCATCAAATATCTCTCTCTTGAAGAACTTAGTTATGCTAAGAATCAGTGATATAGAAAGTCCTGCGCAGGTTTTTCCTCATCTGGAAAACATGGCAAACTTGACTATATTGATTCTAAGGAGCTGTAACTTATCTGGTGTTATACCTTCATACATCTGGACAATGAAGAATTTGGTGACTTTGGATGTCAGTTTTAACAGGCTCGTTGGGGGAATTTCATCAATTATAAGTGCAAGGCGTCTAAGATTTATTTACCTAACAGGTAATATGCTTAGTGGCAATATACCGAATTCAGTCCTGAAGGATGGAAGTAGCATTGATCTATCATACAACAACTTCACTTGGCAAGACTACGAGCAACCTGCATGTCAGGATGGCATGAACTTGAATCTGAATTTGTTCAGAACCTCGATTCTGAAGAATAAGTTAGAGGAGTATGTTCCTTGCTCCAAGAATTTCAGCTGTTCACGGTTTTCAAGTTGTTTACATATTAACTGTGGTGGGAAGGATGTAAGGGTAAAAGATGATAGAGGAGAAAAGCTTTATGCCGGAGAAGGAGATGTTCAGGGTGGCACTGCAACTTATTTCTATAGTGATGATGATCACTGGGGATTTAGTAGCACTGGGGACTTCATGGATGATTTTGAGTCCCAGAACGTACGTTACATTGTATCTCTTCCATCTTCAAATCTGCCAGAATTATATAAAACGGCGCGTGTATCTCCAATTACACTTACTTATTTCCACAACTGCATGCAAAATGGGAACTATACTGTAAACCTTCACTTTGCTGAGATACAATTTACAAATGATAGAACATATAAAAGTCTTGGGAAGCGCATATTTGATATCTATGTTCAGGGAAGAATCACTCGCAAAAATTTTAATATAGAGAATGAAACAAATGTTACTGAAAAACCACTGGTACTGCCCATACACAATATCAGCATCACAAATAATATCTTGGAGATTAGATTCTACTGGGCTGGAAAAGGAACGACTAGAATTCCTGATGTTGGAGTTTATGGCCCCCTTGTATCAGCTATATCTGTGGTTTCAGATTCTAGAACTTGCTCAAATGGAGAAAAGAAAGTTGCTGTTTCGATAATCATTGCCATTGTAGTCGGTGCTGTATGCTTAGTGCTATTTATGTCTGGACTCATTTGGTGGAAGTGGAAAGGTTTTTTCAGAGGGAAACCGCGAAAGAAAGAAGATGCAAAAGATGGAGATATTCAGGCAGGTAATTTTAGCTTGGAGCATATCAGAGCTGCCACCAATGACTTCTCTTCTGCTAATAAGATAGGAGAAGGCGGTTTTGGTCCCGTATACAAGGGTCAATTGGTAGATGGTACTTTTATAGCGGTCAAGCAATTGTCATCAAAATCACGGCAGGGAAATCGGGAATTCATAAATGAAATAGGGTTGATATCTTGTGTGCAGCACCCCAACCTCGTAAAGCTTCATGGATACTGTGCTGAAGGGGAACAACTTTTGCTGGTATATGAGTACATGGAATATAACAGCCTGGCCCGTGCTTTATTTGGTAGTGAGAACCAACGGCTTAAATTGGATTGGCCCACAAGGTTTAGGATTTGCATTGGCATAGCGAAAGGTCTAGCATTTCTCCATGATGAGTCAAGATTCAAGATAGTGCACAGAGATATCAAGGCTTCTAATGTGTTACTCGATGGGGATTTGAATCCAAAAATATCTGACTTTGGCTTGGCTAGGCTTGATGAAACAGAGAAAACCCATATCAGCACCCGAGTTGCTGGGACTATAGGATATATGGCACCAGAATATGCATTATGGGGCCATCTTAGTTACAAGGCCGATGTTTACAGTTTTGGAGTTGTAGCATTAGAAATTGTTAGTGGGAAAAGCAATAACAATTATTTACCAGACGATGGAAGTGCTTGTCTTCTTGATTGGGCATGTCAGTTAAATCAAGCTAAGAAATTAGTGGGGCTTGTTGATGAAAGGTTGGGGCCAGACCTTAATGAAACGGAATTAGAAAAGGTGGTCAGAATTGCTCTCCTGTGCACAAATGCTTCTGTATCTCTTAGGCCTACGATGTCTGAGGTGGTGAATATGTTTGAAGGAGAATTAGATATTCCTGATGCAATTCCAGAACCAAGTACCTACAGTGAGGATTTAAGGTTCAAAGCCTTAAGGGACCTCCATCAACATCGATCAAAGCAGAGTTTGAGTGGTAATTCATCGTCTCATATATTCAGCTCAGCATCTGGTGGTAATACTCACACTAGCAGTAATATTGAGGATCATTGTTCAGCTGACAATAGTTAG 2967 0.4061 MGVASFFVFLFIALSCFQLLTVSASKLPQEEVDALREIASAMGSAYWKFDADSCIIEMVGLTQEPPTESERNIGCDCSFEDSTVCHVVTMTLKRLSLPGTLPPQLAKLPFLRDVDFAYNCFTGSIPEEWASMKLASIMLEANQFSGAVPPELGKLINLQTLVLSSNQLTGNLPLTLAGLQNLTDFRINDNNFNGTVPSFIQSWQHLQRLEMHASGLEGPFPSNISLLKNLVMLRISDIESPAQVFPHLENMANLTILILRSCNLSGVIPSYIWTMKNLVTLDVSFNRLVGGISSIISARRLRFIYLTGNMLSGNIPNSVLKDGSSIDLSYNNFTWQDYEQPACQDGMNLNLNLFRTSILKNKLEEYVPCSKNFSCSRFSSCLHINCGGKDVRVKDDRGEKLYAGEGDVQGGTATYFYSDDDHWGFSSTGDFMDDFESQNVRYIVSLPSSNLPELYKTARVSPITLTYFHNCMQNGNYTVNLHFAEIQFTNDRTYKSLGKRIFDIYVQGRITRKNFNIENETNVTEKPLVLPIHNISITNNILEIRFYWAGKGTTRIPDVGVYGPLVSAISVVSDSRTCSNGEKKVAVSIIIAIVVGAVCLVLFMSGLIWWKWKGFFRGKPRKKEDAKDGDIQAGNFSLEHIRAATNDFSSANKIGEGGFGPVYKGQLVDGTFIAVKQLSSKSRQGNREFINEIGLISCVQHPNLVKLHGYCAEGEQLLLVYEYMEYNSLARALFGSENQRLKLDWPTRFRICIGIAKGLAFLHDESRFKIVHRDIKASNVLLDGDLNPKISDFGLARLDETEKTHISTRVAGTIGYMAPEYALWGHLSYKADVYSFGVVALEIVSGKSNNNYLPDDGSACLLDWACQLNQAKKLVGLVDERLGPDLNETELEKVVRIALLCTNASVSLRPTMSEVVNMFEGELDIPDAIPEPSTYSEDLRFKALRDLHQHRSKQSLSGNSSSHIFSSASGGNTHTSSNIEDHCSADNS* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1169 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 770 782 IPR008271 GO:0004672|GO:0006468
Vra10g1169 988 Gene3D - 379 576 - -
Vra10g1169 988 MobiDBLite consensus disorder prediction 952 988 - -
Vra10g1169 988 Gene3D Transferase(Phosphotransferase) domain 1 724 926 - -
Vra10g1169 988 Pfam Malectin domain 381 569 IPR021720 -
Vra10g1169 988 Gene3D Phosphorylase Kinase; domain 1 617 723 - -
Vra10g1169 988 MobiDBLite consensus disorder prediction 953 988 - -
Vra10g1169 988 SMART serkin_6 648 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1169 988 SUPERFAMILY Protein kinase-like (PK-like) 633 940 IPR011009 -
Vra10g1169 988 ProSiteProfiles Protein kinase domain profile. 648 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1169 988 Pfam Protein tyrosine and serine/threonine kinase 651 918 IPR001245 GO:0004672|GO:0006468
Vra10g1169 988 CDD STKc_IRAK 654 921 - -
Vra10g1169 988 Gene3D Ribonuclease Inhibitor 28 240 IPR032675 -
Vra10g1169 988 SUPERFAMILY L domain-like 84 334 - -
Vra10g1169 988 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 71 139 - -
Vra10g1169 988 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 135 949 - -
Vra10g1169 988 Gene3D Ribonuclease Inhibitor 241 352 IPR032675 -
Vra10g1169 988 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 135 949 - -
Vra10g1169 988 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 71 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1169 Vra-Chr10 17330967 17339949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1169 5 814 Receptor kinase-like Gene Family AT1G29750 55.942 0.0 978
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra10g1169 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1169 - - qsu:111995633 1300.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1169 10 17330967 17339949 Vra10g1169 10 17330967 17339949 ECH