Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1166 ATGGCAACCAGAAAAGACAAAGCCATAGGCATTGACTTGGGAACCACCTATAGCTGCGTGGCAGTGTGGCAACACAACCGCGTCGAGGTGATTCCTAACGACCAAGGCAACCGCACCACCCCTTCCTATGTTGCTTTCAACGACACTCAAAGGTTGTTGGGTGATGCTGCCATGAACCAGCGTTGCATGAATCCGCAAAACACTGTCTTCGACGCCAAACGTTTGATCGGACGAAGATTCTCCGACCAGTCCGTTCAGCAAGACTTGAAGCTCTGGCCCTTTAAGGTTGTCCCGGGTTCTAGGGACAAGCCCATGATTTCTGTCAGATACAGAGATGAAGAGAAGAACCTTGCAGCAGAAGAGATATCTTCCATGGTGCTGTTTAAGATGAAGGAGGTTGCCGAAGCCTATCTGGGTCACGCGGTGAATGATGCGGTGATCACTGTCCCTGCTTATTTCAGCAACGCGCAGAGACAAGCCACTAAGGATGCTGGGAAAATCGCGGGTTTGAACGTGTTGAGGATCATCAACGAGCCAACCGCAGCAGCTATAGCATACGGCTTAGACAAGAAAGGATGGAGAGAGGGTGAGCAGAACGTGCTCGTGTTTGATCTCGGCGGTGGTACTTTTGACGTTTCATTGGTGACAATTGATGAAGGGATGTTTAAGGTTAAGGCCACGGTGGGAGATACTCATTTGGGTGGTGTGGATTTTGACAACAATTTGGTGAACTATCTTGTGAGCATCTTCAAGAGAAGGTACAAGAAGGATATTGCTGAAAACCCCAAGTCTCTTGGAAGGTTGAGGTTAGCGTGCGAGAAGGCCAAGAGGATACTCTCTTCGAGCTCTCAAACAACGATAGAGCTTGATTCTTTATGTGGAGGGGTTGATCTACATGCAATTCTAACAAGGGCGTTGTTCGAGGAATTGAACAGGGAGTTGTTTATGAAGTGTATGGAGACAGTGGAGAAGTGCCTTGTTGAGGCAAGGGTTGACAAAAGCAGAGTCCATGAGTTAGTTCTTGTAGGTGGGTCTACTAGAATTCCAAAAGTACAAGAACTTCTGAAGGACATGTTCAGCGTAAATGGCAAAGGTAAAGAGCTTTGCAAAAGCATTAACCCTGATGAGGCAGTGGCGTACGGTGCGGCGGTTCAGGCCGCGATTTTGGGAGGCGAAGGGGACAAGAAGATTGAGGACTTGTTGTTGTTAGATGTGATGCCTCTTAGTCTTGGAATTGAAACTGGTGGTGGTGACATGTCGGTGTTGATTCCGAAGAACACCATGATCCCCACCAAGAAAGAGAGCGTTTTCTCGACGTTTTCTGATAATCAAACGAGCGTTTTGATTAAAGTTTACGAGGGGGAGGAAGCTAAGACAGAGGACAACTTCCTTCTTGGGAAGTTTGAGCTATCTGGGTTCGCTCCATCGCCAAGGGGGGGTCCACAGATAAATGTTGGGTTTGACGTGGATGTTGATGGCATTGTGGAGGTCACTGCTAAGGATAGGAGCACGGGGTTGAAAAAAAAGATCACGATCACTAACAAGCATGGGAGGTTGAGTTCCGAAGAGATGAGGAGGATGGTGAGAGAAGCAGAGAGGTATAAGGCAGAGGATGAGGAAGCGAAGAAGAAAGTGATGGCCAAGAACTTGCTGGAGAATTATGCTTTTAAAATGAGGGATCGAGTGAAGAATCTGGAGAAGGTGGTGGAGGCGACCATAGAATGGCTCGACACAAACCAATTGGCTGAAGCCGATGAGTTTGAGTACAAGATGCAGGAGTTGGAAGAAAGGGTTTCCAAGTTTATGTAA 1809 0.4765 MATRKDKAIGIDLGTTYSCVAVWQHNRVEVIPNDQGNRTTPSYVAFNDTQRLLGDAAMNQRCMNPQNTVFDAKRLIGRRFSDQSVQQDLKLWPFKVVPGSRDKPMISVRYRDEEKNLAAEEISSMVLFKMKEVAEAYLGHAVNDAVITVPAYFSNAQRQATKDAGKIAGLNVLRIINEPTAAAIAYGLDKKGWREGEQNVLVFDLGGGTFDVSLVTIDEGMFKVKATVGDTHLGGVDFDNNLVNYLVSIFKRRYKKDIAENPKSLGRLRLACEKAKRILSSSSQTTIELDSLCGGVDLHAILTRALFEELNRELFMKCMETVEKCLVEARVDKSRVHELVLVGGSTRIPKVQELLKDMFSVNGKGKELCKSINPDEAVAYGAAVQAAILGGEGDKKIEDLLLLDVMPLSLGIETGGGDMSVLIPKNTMIPTKKESVFSTFSDNQTSVLIKVYEGEEAKTEDNFLLGKFELSGFAPSPRGGPQINVGFDVDVDGIVEVTAKDRSTGLKKKITITNKHGRLSSEEMRRMVREAERYKAEDEEAKKKVMAKNLLENYAFKMRDRVKNLEKVVEATIEWLDTNQLAEADEFEYKMQELEERVSKFM* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1166 602 PANTHER HEAT SHOCK PROTEIN 70KDA 4 596 IPR013126 GO:0005524|GO:0140662
Vra10g1166 602 Coils Coil 524 544 - -
Vra10g1166 602 Gene3D - 9 386 - -
Vra10g1166 602 Gene3D - 70 125 - -
Vra10g1166 602 Gene3D Actin; Chain A, domain 4 234 317 - -
Vra10g1166 602 PRINTS 70kDa heat shock protein signature 7 20 - -
Vra10g1166 602 PRINTS 70kDa heat shock protein signature 35 47 - -
Vra10g1166 602 PRINTS 70kDa heat shock protein signature 57 65 - -
Vra10g1166 602 PRINTS 70kDa heat shock protein signature 145 165 - -
Vra10g1166 602 PRINTS 70kDa heat shock protein signature 208 218 - -
Vra10g1166 602 PRINTS 70kDa heat shock protein signature 372 392 - -
Vra10g1166 602 PRINTS 70kDa heat shock protein signature 399 418 - -
Vra10g1166 602 PRINTS 70kDa heat shock protein signature 480 496 - -
Vra10g1166 602 SUPERFAMILY Actin-like ATPase domain 7 190 IPR043129 -
Vra10g1166 602 ProSitePatterns Heat shock hsp70 proteins family signature 3. 339 353 IPR018181 -
Vra10g1166 602 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Vra10g1166 602 Gene3D - 191 369 - -
Vra10g1166 602 SUPERFAMILY Actin-like ATPase domain 197 389 IPR043129 -
Vra10g1166 602 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 396 552 IPR029047 -
Vra10g1166 602 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Vra10g1166 602 Pfam Hsp70 protein 8 601 IPR013126 GO:0005524|GO:0140662
Vra10g1166 602 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 547 600 IPR029048 -
Vra10g1166 602 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 572 IPR029047 -
Vra10g1166 602 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 4 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1166 Vra-Chr10 17305470 17307700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1166 1 595 Calmodulin-binding Proteins AT1G16030 67.980 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1166 K03283 - gmx:100788531 1045.03