Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1161 ATGGAATCCAAAAACCCTGCGAGGTTTACGCTGGGGAAGCAGTCATCGCTTGCCCCAGAACGCCATAACGAAGGAGCGGAACCTAAAAACGAAGGAAACGCTGTTGATCAGGGTGTGAGGTTGATGTACTCGGCGTTCGAAGGGGATGTGGATGGTATTCGCGAGGTGTTAGAGTCTGGTGTGAGTGTGAATTACAAGGATATTGATTATCGCACTGCTCTTCATGTCGCATCATGTGAGGGCTTCACTGATGTCGCTGATTTGTTACTCCAAAAAGGTGCTGAAGTTGACGCTAAAGATCGATGGGGGAGCACGCCACTTGCAGATGCTATTTTTTATAAAAGAAATGACGTGATCAAACTATTGGAGAAGCATGGAGCAAAGCCACTGATGGCCCCTATGCATGTTAATCACGCGCGTGAAGTCCCAGAGTATGAAATAAATCCAGAAGAGCTCGATTTTACCAACAGTGTGGAGATAACGAAGGGGACTTTCTGTAGTGCATTGTGGCGTGGAACAGAGGTTGCAGTAAAAAAGCTTGGGGAGGAAGTAATTAGTGATGAGGAGAAAGTGAAGGCTTTCAGAGATGAACTTGCCTTGTTCCAGAAGATCCGGCATCCAAATGTCATCCAATTTCTGGGTGCTGTGACTCAGAGCAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGATTTCTTGAAAAGAAAGGGAGCTTTGAAACCATCTACAGCTGTGAGATTCGCACTTGATATTGCTAGGGGAGTGGGTTATTTGCATGAAAATAAGCCATCACCCATTATTCACCGTGATCTTGAACCTTCTAATATATTGCGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTGGCCGTTAAAGAAGACAAGCCTCTAACATGCCAAGAAACCTCCTGCCGGTATGTGGCTCCGGAAGTTTTCAAACAAGAAGAATATGACACCAAAGTGGATGTATTTTCATTTGCACTAATTCTACAAGAGATGATTGAAGGCTGCCCTCCTTTTTCTGCAAAGCAAGAAGATGAAGTTCCTAAGGTGTATGCTGCCAAAGAGCGTCCACCTTTTCGAGCTCCATCCAAACATTACTCCCATGGAATTAGAGAATTGATTGAGGAGTGCTGGAATGAAAATCCAGCTATGAGGCCAACATTCAGGCAAATTATAACAAGGCTGGAGTTCATCTACAACGCAATCGGTCAAAAAAGACGTTGGAAGGTTAGGCCATTGAAATGTTTCCAAAATCTGGAAGCCTTGTTAAAGAGAGATCATTCAAATGGTAGCAGTCGTGGTTCATCTCGCTCTAAATCCAGCAGAATATGA 1368 0.4444 MESKNPARFTLGKQSSLAPERHNEGAEPKNEGNAVDQGVRLMYSAFEGDVDGIREVLESGVSVNYKDIDYRTALHVASCEGFTDVADLLLQKGAEVDAKDRWGSTPLADAIFYKRNDVIKLLEKHGAKPLMAPMHVNHAREVPEYEINPEELDFTNSVEITKGTFCSALWRGTEVAVKKLGEEVISDEEKVKAFRDELALFQKIRHPNVIQFLGAVTQSSPMMIVTEYLPKGDLRDFLKRKGALKPSTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDKPLTCQETSCRYVAPEVFKQEEYDTKVDVFSFALILQEMIEGCPPFSAKQEDEVPKVYAAKERPPFRAPSKHYSHGIRELIEECWNENPAMRPTFRQIITRLEFIYNAIGQKRRWKVRPLKCFQNLEALLKRDHSNGSSRGSSRSKSSRI* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1161 455 CDD STKc_MAP3K-like 160 407 - -
Vra10g1161 455 Gene3D Transferase(Phosphotransferase) domain 1 230 450 - -
Vra10g1161 455 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 438 - -
Vra10g1161 455 Pfam Protein tyrosine and serine/threonine kinase 170 407 IPR001245 GO:0004672|GO:0006468
Vra10g1161 455 Gene3D - 7 145 IPR036770 -
Vra10g1161 455 SMART ANK_2a 69 98 IPR002110 GO:0005515
Vra10g1161 455 SMART ANK_2a 102 131 IPR002110 GO:0005515
Vra10g1161 455 SMART ANK_2a 36 65 IPR002110 GO:0005515
Vra10g1161 455 ProSiteProfiles Protein kinase domain profile. 119 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1161 455 SUPERFAMILY Protein kinase-like (PK-like) 159 410 IPR011009 -
Vra10g1161 455 ProSiteProfiles Ankyrin repeat region circular profile. 69 101 - -
Vra10g1161 455 Pfam Ankyrin repeats (3 copies) 41 129 IPR002110 GO:0005515
Vra10g1161 455 SUPERFAMILY Ankyrin repeat 40 131 IPR036770 -
Vra10g1161 455 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515
Vra10g1161 455 PRINTS Tyrosine kinase catalytic domain signature 226 239 IPR001245 GO:0004672|GO:0006468
Vra10g1161 455 PRINTS Tyrosine kinase catalytic domain signature 265 283 IPR001245 GO:0004672|GO:0006468
Vra10g1161 455 PRINTS Tyrosine kinase catalytic domain signature 378 400 IPR001245 GO:0004672|GO:0006468
Vra10g1161 455 PIRSF ILK 1 430 - -
Vra10g1161 455 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 438 - -
Vra10g1161 455 Gene3D Phosphorylase Kinase; domain 1 146 229 - -
Vra10g1161 455 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1161 Vra-Chr10 17273391 17281062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1161 8 428 MAP Kinase Kinase Kinase AT4G18950 68.545 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vra10g1161 PK_Tyr_Ser-Thr 1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1161 - - gmx:100790126 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1161 10 17273391 17281062 Vra10g1161 10 17273391 17281062 ECH