Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1160 ATGGCTTTTCCAAACCCATCCATGTCAGTTTCTCCACAGAGGAAGATGGGAAGGGGGAAGATTGAGATCAAGCGGATTGAGAACACCACCAATCGCCAAGTCACTTTCTGCAAGCGCAGAAACGGCTTGCTCAAGAAAGCATATGAATTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATCGTCTTCTCTAGCCGCGGCCGTCTCTATGAATATGCTAATAACAGTGTCAAAGAAACTATTGAGAGGTACAAAAAAGCATGCTCAGATTCGTCTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGATAAACTTCGTGCACAAATAAGTAGCCTGCAGAATAACAACAGGCAAATGATGGGTGAGTCTTTGGGCTCTATGACTACCAAGGATCTCAAAAACCTGGAGAGTAAACTAGAAAAAGGAATTAGTAGGATTCGTTCAAAAAAGAACGAGCTGCTATTTGCTGAAATTGAGTACATGCAGAAGAGGGAGATAGACTTGCACAACAACAACCAGCTTCTTCGAGCGAAGATAGCTGAAAGTGAGAGGAGCCACAATATGGGTGTGTTGCCTGGAGGCACAAGCTATGACTCTATGCAGTCTCAGCAGCCATTTGACTCTCGTGGCTACTTCCAAGTCACTGGATTACAACCCAATAGTCAGTATGCCAGACAAGATCAGATGTCCCTTCAATTAGTATGA 723 0.4426 MAFPNPSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKETIERYKKACSDSSAGSASEANAQFYQQEADKLRAQISSLQNNNRQMMGESLGSMTTKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERSHNMGVLPGGTSYDSMQSQQPFDSRGYFQVTGLQPNSQYARQDQMSLQLV* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1160 240 Gene3D - 28 125 IPR036879 GO:0003677|GO:0046983
Vra10g1160 240 Coils Coil 101 128 - -
Vra10g1160 240 PANTHER AGAMOUSB 10 234 - -
Vra10g1160 240 PANTHER MADS BOX PROTEIN 10 234 - -
Vra10g1160 240 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Vra10g1160 240 Coils Coil 138 158 - -
Vra10g1160 240 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Vra10g1160 240 Pfam K-box region 98 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra10g1160 240 SUPERFAMILY SRF-like 17 96 IPR036879 GO:0003677|GO:0046983
Vra10g1160 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Vra10g1160 240 ProSiteProfiles K-box domain profile. 101 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra10g1160 240 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Vra10g1160 240 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Vra10g1160 240 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Vra10g1160 240 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Vra10g1160 240 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1160 Vra-Chr10 17247182 17255634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1160 14 240 MADS-box Gene Family AT3G58780 67.234 6.78e-106 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra10g1160 K-box 1.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1160 K09264 - gmx:732595 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1160 10 17247182 17255634 Vra10g1160 10 17247182 17255634 ECH
Vra7g2202 7 41971020 41977067 Vra10g1160 10 17247182 17255634 PCT