Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1140 ATGGCACCAGACGAAGAACACAAGGTCAAAGTCCAGGAGAAGGTTCCATTTTATAAGCTATTCATTTTTGCAGATAGCCTTGACAGGACTTTGATGATCATTGGTCTTATCTGTGCCATGGCTAATGGGATGGGGCAGCCTCTCATGACCCTAATTTTTGGGAAGATGATCAATGCCTTTGGCTCCACTGATCCTTCCCACACAGTCAAGGAAGTTTCCAAGGTTGTGTTATTATTTGTTTACCTGGCTTTTGGTGCTGGAATAGCCTCTTTTCTGCAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCCGCTAGGATCCGTTGCATGTACTTGAAAACTATATTGAAGCAAGACATTACCTTTTTTGACACTGAAACAAGTGGTGAGGTAATTGGAAGAATGTCAGGTGACACCATTCTCATTGAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATTCAACTTGTTACATCCTTTTTTGGTGCCTTTATAATTGCCTTCACAAGAGGATGGAAACTCTGTCTAGTTCTGCTTGCATGTATTCCTTGTATTGTTATTGTTGGTGGAATTATATCCGTGATGATGGAGATAATGTCAACACGGGGGCACGCTGCTTATGCAGAAGCTGGAAGTGTTGCAGAACAAACAGTTGGAGCCATCAGAACAGTTGCCTCTTTCACTGGTGAGAAAAAAGCAATAGAAAAGTATAATAACAAGTTAAGGATAGCTTATATTACAACTGTTGAACAAGGGCTGGCTTCAGGGTTTGGAATGGGAATACTTTTATTGATTATATTTTCCACCTATGCACTTGCCATGTGGTATGGTTCTAAACTCATCATTGACAAAGGCTATGATGGTGGAACTGTTTTCAACATTATCATATCAATCAATACTGGTGCAATGGCACTTGGTCAGGCAACACCATACGTGAATTCATTTGCAGCCGGTCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCAAAAATAGATGCTTATGACACCAATGGTGTTGTCTTAGAAGACATAAAGGGAGATGTTGAACTCAAAGATGTTTACTTCAGATACCCTGCAAGGCCAGATGTTCAGATATTTTCCGGATTCTCATTCTATATTCCGAGTGGCACAACTGCTGCTTTAGTGGGTCAAAATGGAAGTGGGAAGTCAACTATAATCAGTTTATTAGAAAGATTTTATGATCCTGAAGCTGGAGAAGTTCTTATAGATGGCGTGAATTTGAAGAATTTTCAAGTTAGATGGATTAGAGAACAGATTGGACTTGTTGGTCAAGAGCCTGTCCTGTTTACAGCTAGTATTAAAGACAACATAGCATACGGGAAAGAAGGTGCAACAGATGAGGAGATAACTAAAGCAATAACTCTTGCCGATGCAAAAAAATTCATTGATAAGCTGCCTCAGGGCATTGATACGGTGGTAGGAGGACATGAAACTCAAATTTCCGGTGGGCAAAAACAAAGAATTGCAATTGCAAGGGCAATTTTAAAGAACCCAAGAATCCTTCTCCTCGATGAAGCTACAAATGCATTAGATGCTGAGTCTGAGCATATTGTTCAAGTAGCACTTGAAAAAGTTATGACCCCAAGGACTACTGTAGTTGTTGCACATCGTTTGACAACTATTAGACACGCTGACATCATAGCAGTGGTACATCAGGGAAAAATTGTGGAGAAAGGAACTCATGATGAGTTAATCAAGGATGCTGATGGTGCTTATTCTCGGCTTGTTCGTCTACAAGAAGGAAATAAAGGAGCAGAAGAAGGGAGCCGTAAGTCAGAAAAGTCAAATAACAACAGTTTCGACCTAACTCGAAGAACATCCTTTGCGAGATCGAGCAGTAGACACTCTCTCACACTTGGTTTTGCTCTTCCTTATCAAATTCCCTTGCACGAGTCTGGAGTGGAAGATAACGGGGATGTTGAAAGTAGTGAAGTTGATAATAAGAAGCATCAAAAGGTTGCTGTTAACTATTTGGTCAAGTTGAACAAGCCAGAGGTTCCTGTCTTAGTACTAGGATCCATTGCAGCCGCAATACATGGTCTTACTCTCCCTGTATTTGGACTCTTGCTCTCATCAGCTGTTAACACATTTTTTAAACCTCCTGATCAGCTAAGGAAAGATTCTATGTTTTGGTCATTTCTATTTGTTGGTTTGGGGATTGTCGGTCTGGTGGCTATGACATTGCAAAACTACTTATTTGGGATAGCAGGTGGGAAGCTTATAGAACGAATTCGTTCAATGACATTTAATAAGGTTGTGCACCAAGAAATCAGTTGGTTCGATCATCCTTCAAATTCATGTGGTGCAGTTAGTGCAAGGCTAGCTACTGATGCTTCAAGGGTGAGAAGTCTCGTCGGTGACACCTTATCCCTCGTTGTGCAAAACATAGCAACAATCACAACAGGTTTAGTTATAGCATTCACTGCTAATTGGATTCTGGCTTTTGTAATTCTGGCTTTGTCACCCTTGTTGCTTCTACAAGGATACCTTCAAACCAAGTTCTTGAAAGGATTCCGTGCAGATGCAAAGGTGAAGTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTATTGGTTGCATTAGAACTGTTGCATCATTCTGTGCTGAGCCAAAGGTGGTGGATATGTACATGAAGAAATGTTCAGGGCCAAAAAAACAAGGTGTTCGCTTGGGACTTGTTAGTGGTGCAGGACTAGGTTTTTCTTTTCTTGCTCTATACTGCACAAATGCTTTCTGTTTCTACATAGGATCTATTCTTGTGCAAGACGGGAAAGCAACTTTTGGAGAGGTTTTCAAGGTTTTCTTTGCCTTAACAGTTACAGCAATTGGTGTTTCCCAGAGCAGTGCCTTGGCTCCAGATACTAACAAAGCCAAAGATTCTGCAACTTCAATATTCAAAATTCTTGATACCAAATCAGCGATTGACTCCAGCAGTGATGAGGGCACAACACTAGACCTCATAAAAGGTGATATTGAACTACAACAAGTCAGCTTTTGTTACCCAACAAGGCCTGATATTCAAATCTTCAAGGACTTGTGTCTAAGCGTGCCAGCTGCAAAGACCGTTGCCTTGGTTGGGGAAAGTGGGAGTGGTAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTGATTCTGGACGTATACTACTTGATGGAGTGGATATAAAAAACTTCAGACTCAGTTGGTTGAGACAACAAATGGTTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTCGTGCCAACATAGCTTATAGTAAAGAGGGAGGTGCCACAGAGGAAGAAATAGTTGCAGCAGCAGAAGCAGCAAATGCACACAAGTTCATAAGCTCTCTTCCACATAGTTATGACACCCCTGTGGGAGAACGAGGGACACAACTGTCAAGAGGACAAAAGCAACGCATAGCTATTGCAAGAGCCATTCTGAAAGATCCAAAAATCCTTTTGCTGGATGAGGCCACCAGTGCACTAGATGCAGAATCTGAGTGTGTGGTTCAAGAGGCTCTTGATAAAGTGAGTGTTAATAGAACTACAGTTATGGTAGCTCACCGTCTTGCAACAATTAAAGATGCTGACATTATAGCAGTAGTAAAAAATGGGGTCATTGCTGAGAAGGGGAGACATGAAGCGTTGATGAAGATTGATGATGGAGTTTATGCTTCAATGGTATCTCTCCATATTAGTGCATCATAG 3741 0.4122 MAPDEEHKVKVQEKVPFYKLFIFADSLDRTLMIIGLICAMANGMGQPLMTLIFGKMINAFGSTDPSHTVKEVSKVVLLFVYLAFGAGIASFLQVSCWMVTGERQAARIRCMYLKTILKQDITFFDTETSGEVIGRMSGDTILIEDAMGEKVGKFIQLVTSFFGAFIIAFTRGWKLCLVLLACIPCIVIVGGIISVMMEIMSTRGHAAYAEAGSVAEQTVGAIRTVASFTGEKKAIEKYNNKLRIAYITTVEQGLASGFGMGILLLIIFSTYALAMWYGSKLIIDKGYDGGTVFNIIISINTGAMALGQATPYVNSFAAGQAAAYKMFETIKRKPKIDAYDTNGVVLEDIKGDVELKDVYFRYPARPDVQIFSGFSFYIPSGTTAALVGQNGSGKSTIISLLERFYDPEAGEVLIDGVNLKNFQVRWIREQIGLVGQEPVLFTASIKDNIAYGKEGATDEEITKAITLADAKKFIDKLPQGIDTVVGGHETQISGGQKQRIAIARAILKNPRILLLDEATNALDAESEHIVQVALEKVMTPRTTVVVAHRLTTIRHADIIAVVHQGKIVEKGTHDELIKDADGAYSRLVRLQEGNKGAEEGSRKSEKSNNNSFDLTRRTSFARSSSRHSLTLGFALPYQIPLHESGVEDNGDVESSEVDNKKHQKVAVNYLVKLNKPEVPVLVLGSIAAAIHGLTLPVFGLLLSSAVNTFFKPPDQLRKDSMFWSFLFVGLGIVGLVAMTLQNYLFGIAGGKLIERIRSMTFNKVVHQEISWFDHPSNSCGAVSARLATDASRVRSLVGDTLSLVVQNIATITTGLVIAFTANWILAFVILALSPLLLLQGYLQTKFLKGFRADAKVKYEEASQVANDAIGCIRTVASFCAEPKVVDMYMKKCSGPKKQGVRLGLVSGAGLGFSFLALYCTNAFCFYIGSILVQDGKATFGEVFKVFFALTVTAIGVSQSSALAPDTNKAKDSATSIFKILDTKSAIDSSSDEGTTLDLIKGDIELQQVSFCYPTRPDIQIFKDLCLSVPAAKTVALVGESGSGKSTVISLLERFYNPDSGRILLDGVDIKNFRLSWLRQQMVLVGQEPILFNESIRANIAYSKEGGATEEEIVAAAEAANAHKFISSLPHSYDTPVGERGTQLSRGQKQRIAIARAILKDPKILLLDEATSALDAESECVVQEALDKVSVNRTTVMVAHRLATIKDADIIAVVKNGVIAEKGRHEALMKIDDGVYASMVSLHISAS* 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1140 1246 ProSitePatterns ABC transporters family signature. 492 506 IPR017871 GO:0005524
Vra10g1140 1246 Pfam ABC transporter 373 520 IPR003439 GO:0005524
Vra10g1140 1246 Pfam ABC transporter 1022 1171 IPR003439 GO:0005524
Vra10g1140 1246 CDD ABC_6TM_Pgp_ABCB1_D2_like 672 986 - -
Vra10g1140 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 682 968 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g1140 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 353 589 IPR003439 GO:0005524
Vra10g1140 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1003 1240 IPR003439 GO:0005524
Vra10g1140 1246 CDD ABC_MTABC3_MDL1_MDL2 353 591 - -
Vra10g1140 1246 MobiDBLite consensus disorder prediction 593 610 - -
Vra10g1140 1246 Gene3D ABC transporter type 1, transmembrane domain 77 977 IPR036640 GO:0005524|GO:0016021
Vra10g1140 1246 Gene3D - 994 1245 IPR027417 -
Vra10g1140 1246 Pfam ABC transporter transmembrane region 32 304 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g1140 1246 Pfam ABC transporter transmembrane region 682 953 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g1140 1246 SUPERFAMILY ABC transporter transmembrane region 669 983 IPR036640 GO:0005524|GO:0016021
Vra10g1140 1246 MobiDBLite consensus disorder prediction 593 619 - -
Vra10g1140 1246 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 1243 - -
Vra10g1140 1246 SUPERFAMILY ABC transporter transmembrane region 21 337 IPR036640 GO:0005524|GO:0016021
Vra10g1140 1246 CDD ABC_MTABC3_MDL1_MDL2 1003 1239 - -
Vra10g1140 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 33 318 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g1140 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 591 IPR027417 -
Vra10g1140 1246 SMART AAA_5 380 566 IPR003593 -
Vra10g1140 1246 SMART AAA_5 1030 1223 IPR003593 -
Vra10g1140 1246 CDD ABC_6TM_Pgp_ABCB1_D1_like 32 326 - -
Vra10g1140 1246 Gene3D - 351 605 IPR027417 -
Vra10g1140 1246 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 1243 IPR039421 -
Vra10g1140 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1241 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1140 Vra-Chr10 17090063 17095322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1140 5 1242 Calmodulin-binding Proteins AT2G36910 43.095 0.0 1010
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1140 K05658 - gmx:100792531 2010.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1140 10 17090063 17095322 Vra10g1140 10 17090063 17095322 ECH