Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1139 ATGGCACACAAGACGGACGGGTTATCTTCTTCTACGTCTTTTCAACATAACAAAGACAATCATAAAACCAATCAAAAGGTTCCCTTCTACAAACTATTTACCTTTGCAGATCACTTTGACGTGACTTTGATGACCATTGGCACAATCTGTGCCATGGCTAATGGCTGGTCACAGCCTATTATGACTGTCATTTTAGGAAAACTTATCAACACTTTTGGTTACACCGATCCATCAAATACCATCAAAGAGGTTTCGAAGGTTTCTTTATTATTGGTATACTTAGCTATTGCGACTGGAATTGCTTCCTTTCTTCAGGTAGCATGTTGGATGATGACAGGAGAAAGACAAGCTGCGAGGATTCGAAGTTTGTACTTGAAAACTATATTGAAGCAGGATATTGCTTTCTTTGACACTGAGACAACAACAGGAGAGATTATTGGGAGAATGTCGGGTGACACTATTCTCATTCAAGATTCCATGGGAGAAAAGGTTGGGAAGTTTATACAACTTTCTTCAACTTTTATTGGTGGCTTTGTGATCGCTTTTGTAAGAGGATGGCGACTTGCTGTTATTTTGATCGCATGTATACCTTGTGTTGTTATTATTGGTGGAATTCTGTCCATTTTAATGAGTAGAATGTCAAGTCGTGGGCAAGCTGCTTACGTAGAGGCAGGAACTGTGGTTGAACAAACAGTGGGAGCTATCAGAACAGTGGCATCTTTCACTGGTGAGAGAAAAGCAATGGAAAAGTATAATAACAAATTAAAGATTGCTTATAAAACTATGGTTCAACAAGGGATGGCCTCTGGGTTAGGACTGGGGGTACTTTTGTTGACTGTCTTCTGTACCTATGCACTTGCCATGTGGTATGGTTCTAAACTGGTTATTGAGAAAGAATTCAATGGTGGATCTGTCATCACTGTAATAGTGGCTCTTATGACTGGTGGAATGTCACTTGGTCAAACATCTCCTAGCCTAAACGCATTTTCTGCAGGCCGAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCAAAAATTGATGCTTATGACACCAATGGTATTGTCATGGAAGACATAAGGGGAGATATTGAACTCAACAATGTTTACTTTAGCTACCCTGCAAGGAAAAATGTGCAGATCTTTTCTGGATTCTCATTACATGTTTCTAGTGGCACAACTGCCGCTTTAGTGGGTCAAAGTGGGAGTGGAAAGTCTACTGTGATATCTTTATTGGAAAGATTCTACGATCCTGATTCTGGAGAAGTACTGATAGATGGCGTGAATTTGAAGGATTTTCATCTTAAATGGATAAGAGAACAAATCGGATTGGTTAGTCAAGAACCTATTCTCTTTGCAGCAAGTATCAAAGAGAACATAATCTATGGAAAAGAAGGTGCAACTGATGAGGAAATTAAGTCAGCAATAACTCTTGCCAATGCCAAGACGTTCATTGACAAGCTGCCTCAGGGCCTTGAGACAATGGCAGGCCAGAATGGGACTCAACTTTCTGGTGGACAAAAGCAGAGAATTGCAATTGCAAGGGCAATTCTAAAAAACCCAAGAATCCTTCTTCTTGATGAAGCAACTAGTGCATTAGATGCCGAGTCCGAACGTGTTGTCCAAGAAGCATTAGAACAAGCGATGTCAAAAAGGACTACTGTAGTTGTTGCACATCGCTTGACAACAATCAGAAATGCTGACACCATAGCGGTGGTTCATGAAGGAAAAATTGTGGAGAAAGGAACTCATGATGAGTTAATCAAGGAGGTTGATGGTGCTTATTCTCAGCTTATTCGCCTACAGGAAGGAACTAAGGAAGCTGAGGGTAGCCATAATTCTGAAGCAGAGATGCCAAATAACAATGTTAATGTCAGATCTTCCACCCAGAGAGAAGTTTCATTAAGTAGAGATTCATCAAGTAGACATTCCGAGTCACATACTCTTTCTCATCGAAGTGGGGTACATGAATCTGTAGAAGTAGAAGATGAAGATGGGGATTTTGAAAAAAATAAAGTTGATGCTAAGAAGCCCAAAAAGGTTTCTTTGACACGTTTGGCCTACTTAAACAAGTCTGAAGTTCCTGTCTTAGTGCTTGGATCCGTTGCTGCAATAATACATGGTCTTGTGTTCCCTATTTTTGGCTTCTTGTTTTCCTCAGCAATAACTATGTTCTTTGAACCTCCAGAAAAACAGCGGAAAGATTCTAGGTTCTGGGCACTTCTATATGTGGGTTTGGGTTTAATTACTCTTGTGGTGATACCTGTGCAAAATTACTTCTTTGGCGTTGCTGGAGGAAAATTAATAGAAAGAATTCGTTCACTGACATTTGAAAGGGTTGTCCATCAAGAAATCAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGCGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTAGTTGGTGACACATTAGCCCTAATTGTACAAAACTTAACAACAATCATAGCTGGTCTAGTTATATCATTCACTGCTAATTGGATTCTTGCTTTCATAATTCTGGCTGTGTCACCCTTGGTCCTTATGCAAGGATTTCTTCAGATGAAGTTTCTTAAAGGATTCAGTGCAGATGCCAAGGTAAAGTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTTGGTAGCATCAGAACTATCGCATCATTCTGTGCCGAATCGAAGGTGATGGATATGTACCGAAAGAAATGTTTAGAACCGGAAAAACAAGGTGTTCGGTTGGGGCTTGTGAGTGGTGCAGGATTTGGTTTCTCTTTTCTTGCTCTATACTGCACAAATGCTTTTTGTTTCTATATAGGATCTGTTCTTGTGCAACATGGGAAAGCAACTTTTCAAGAGGTTTTCAAGGTCTTCTTTTGTTTAACCATCACAGCAATGGGCGTTTCTCAGACTACTGCCTTGGCACCAGACACCAACAAAGCCAAAGATTCCGCAGCATCAATATTTAACATTCTTGACAGTACACCCACCATTGACTCCAGCAGCAATGAGGGAAGAACACTAGAAGCCATTGCTGGTGATATTGATTTTGAACACGTCAGTTTTAGTTATCCAACTAGGCCTCATATTCAAATTCTCAAAGATTTGTGTCTAATCATTCCAGCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGGAGTGGAAAATCAACAGTAATCAGCCTCTTAGAGAGATTTTACAACCCTCACACTGGACATATACTACTGGATGGAGTGGATATAAAAGAGTTCAGACTAAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAACCTATTCTCTTCAATGAAAGTATTCGTGCCAACATAGCATATGGTAAAGAAGGAGTTGCCACAGAGGAAGAGATAATTGCAGCAGCCAAAGCATCCAATGCACACCAATTTATATGTGCTCTTCCCCAAGGCTATGACACCCCAGTTGGAGAAAGAGGAACACAATTGTCAGGAGGACAAAAGCAGCGAATAGCCATTGCAAGAGCCATGCTGAAAGACCCTAAAATCCTCTTGCTTGATGAAGCAACTAGTGCACTTGATGCCGAGTCAGAAAAAGTAGTTCAAGAGGCTCTAGATAGAGTAAGTTTGAATAGAACTACAGTAGTAGTAGCTCACCGTCTTACAACAATTAGAGGGGCTGATATAATAGCTGTAATGAAAGATGGAGCGGTAGCTGAAAAGGGAAAACATAATGAGTTGATGAAGATTATCAATGGAGTCTATGCATCATTGGTTGCTCTACATACGACTAATACATGA 3795 0.4053 MAHKTDGLSSSTSFQHNKDNHKTNQKVPFYKLFTFADHFDVTLMTIGTICAMANGWSQPIMTVILGKLINTFGYTDPSNTIKEVSKVSLLLVYLAIATGIASFLQVACWMMTGERQAARIRSLYLKTILKQDIAFFDTETTTGEIIGRMSGDTILIQDSMGEKVGKFIQLSSTFIGGFVIAFVRGWRLAVILIACIPCVVIIGGILSILMSRMSSRGQAAYVEAGTVVEQTVGAIRTVASFTGERKAMEKYNNKLKIAYKTMVQQGMASGLGLGVLLLTVFCTYALAMWYGSKLVIEKEFNGGSVITVIVALMTGGMSLGQTSPSLNAFSAGRAAAYKMFETIKRKPKIDAYDTNGIVMEDIRGDIELNNVYFSYPARKNVQIFSGFSLHVSSGTTAALVGQSGSGKSTVISLLERFYDPDSGEVLIDGVNLKDFHLKWIREQIGLVSQEPILFAASIKENIIYGKEGATDEEIKSAITLANAKTFIDKLPQGLETMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEQAMSKRTTVVVAHRLTTIRNADTIAVVHEGKIVEKGTHDELIKEVDGAYSQLIRLQEGTKEAEGSHNSEAEMPNNNVNVRSSTQREVSLSRDSSSRHSESHTLSHRSGVHESVEVEDEDGDFEKNKVDAKKPKKVSLTRLAYLNKSEVPVLVLGSVAAIIHGLVFPIFGFLFSSAITMFFEPPEKQRKDSRFWALLYVGLGLITLVVIPVQNYFFGVAGGKLIERIRSLTFERVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNLTTIIAGLVISFTANWILAFIILAVSPLVLMQGFLQMKFLKGFSADAKVKYEEASQVANDAVGSIRTIASFCAESKVMDMYRKKCLEPEKQGVRLGLVSGAGFGFSFLALYCTNAFCFYIGSVLVQHGKATFQEVFKVFFCLTITAMGVSQTTALAPDTNKAKDSAASIFNILDSTPTIDSSSNEGRTLEAIAGDIDFEHVSFSYPTRPHIQILKDLCLIIPAGKTVALVGESGSGKSTVISLLERFYNPHTGHILLDGVDIKEFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGVATEEEIIAAAKASNAHQFICALPQGYDTPVGERGTQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAESEKVVQEALDRVSLNRTTVVVAHRLTTIRGADIIAVMKDGAVAEKGKHNELMKIINGVYASLVALHTTNT* 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1139 1264 SUPERFAMILY ABC transporter transmembrane region 31 350 IPR036640 GO:0005524|GO:0016021
Vra10g1139 1264 MobiDBLite consensus disorder prediction 638 673 - -
Vra10g1139 1264 MobiDBLite consensus disorder prediction 616 637 - -
Vra10g1139 1264 CDD ABC_6TM_Pgp_ABCB1_D1_like 44 339 - -
Vra10g1139 1264 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 700 986 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g1139 1264 CDD ABC_MTABC3_MDL1_MDL2 366 604 - -
Vra10g1139 1264 Gene3D - 364 636 IPR027417 -
Vra10g1139 1264 MobiDBLite consensus disorder prediction 1 18 - -
Vra10g1139 1264 CDD ABC_6TM_Pgp_ABCB1_D2_like 689 1004 - -
Vra10g1139 1264 Pfam ABC transporter transmembrane region 44 315 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g1139 1264 Pfam ABC transporter transmembrane region 700 972 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g1139 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 604 IPR027417 -
Vra10g1139 1264 ProSitePatterns ABC transporters family signature. 1161 1175 IPR017871 GO:0005524
Vra10g1139 1264 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 366 602 IPR003439 GO:0005524
Vra10g1139 1264 Gene3D ABC transporter type 1, transmembrane domain 90 995 IPR036640 GO:0005524|GO:0016021
Vra10g1139 1264 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 46 331 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g1139 1264 CDD ABC_MTABC3_MDL1_MDL2 1021 1257 - -
Vra10g1139 1264 MobiDBLite consensus disorder prediction 1 20 - -
Vra10g1139 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1011 1259 IPR027417 -
Vra10g1139 1264 SMART AAA_5 393 585 IPR003593 -
Vra10g1139 1264 SMART AAA_5 1048 1235 IPR003593 -
Vra10g1139 1264 SUPERFAMILY ABC transporter transmembrane region 681 1005 IPR036640 GO:0005524|GO:0016021
Vra10g1139 1264 ProSitePatterns ABC transporters family signature. 505 519 IPR017871 GO:0005524
Vra10g1139 1264 Gene3D - 1011 1264 IPR027417 -
Vra10g1139 1264 MobiDBLite consensus disorder prediction 605 673 - -
Vra10g1139 1264 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1021 1258 IPR003439 GO:0005524
Vra10g1139 1264 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 21 1261 - -
Vra10g1139 1264 Pfam ABC transporter 1039 1189 IPR003439 GO:0005524
Vra10g1139 1264 Pfam ABC transporter 386 533 IPR003439 GO:0005524
Vra10g1139 1264 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 21 1261 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1139 Vra-Chr10 17084117 17089243 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1139 27 1260 Calmodulin-binding Proteins AT2G36910 43.916 0.0 1045
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1139 K05658 - gmx:100801771 2041.93