Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1133 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCGCCCCAGGAAGGGGAAAGGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGTAGCCGCGTGGTATACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTGTCGACCAACAAGGAAGTGGATGCTCATATCCCAAACTACCCAAGCTTGCCTCCTCAACTCATTTGTCAACTTCATAACATGACTATGCATGCTGATGCAGAGACTGACGAAGTGTATGCACAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCATACCTTCCAGCTGAATTGGGCACTCCTAGTAAACAGCCCACAAACTATTTCTGCAAAACTTTGACTGCAAGTGACACAAGCACTCATGGGGGATTCTCTGTACCTCGCCGTGCAGCTGAAAAAGTGTTCCCTGCATTGGATTTTTCTCAGCAGCCTCCTGCTCAAGAATTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGCGGTCAGCCCAAAAGGCATCTACTTACCACTGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAGCTTCTTCTTGGGATCCGTCGTGCTAATCGACCACAAACTGTGATGCCTTCATCAGTGTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCAGCAACAAATAGTCGTTTCACCATTTTCTATAATCCACGTGCTAGCCCATCAGAATTTGTCATACCCTTAGCAAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTCGGTATGCGGTTCAGGATGCTGTTTGAAACTGAGGAATCAAGTGTGCGACGATATATGGGTACAATAACTGGCATTAGTGACCTGGATTCTGCCCGGTGGCCAAACTCACACTGGCGCTCAGTTAAGGTTGGCTGGGATGAATCTACTGCTGGAGAGAGACAACCTAGAGTGTCTCTATGGGAAATTGAGCCCTTAACTACGTTTCCTATGTATCCATCTCCATTTCCCCTTAGACTTAAACGACCATGGCCTCCAGGACTGCCTTCATTCCATGGTATAAAGGATGATGATTTTGGCCTAAATTCATCTCTCTTGTGGCTCCGAGACAGTGATAGGGGGCTTCAGTCTCCTACTTTTCAGGGAATTGGTGTTAATCCTTGGATGCAGCCTAGATTTGATCCCTCTATGTTGAATATGCAAACAGATATGTATCAAGCTGCTGCTGCTGCTGTTCAGGAGATGAGGGGTTTGGATCCTTCCAAACAGCATTCTGCTTCCGTACTTCAATTCCAACAACAGCAGAATTTCCCAAACAGGACAGCTTCTTTTGTGCAGGCGCAGGCCCAGATGTCGCAGCAGCCACAACATCAGCAGATTTTTGGAAACAATCAAGAGAATCAACATTCACCACAATCTCAGCTGCAAACTCAGGCTCATCTTCAGCAACATTTACAACATCAGCACTCATTTAATAGTCAGCATCATCATCAGCACCAGCAACCACAACTACGGACACAGCAGCAACAACAACAACAGCAACAAGTAGTAGATAATCAGCACATTTCTAGTGCAGTCTCTTCAATGTCTCAGTTTGTTTCAGCTCCTCCACCTCAATCACCACCTATGCAAGCTATCGCCTCCTTGTGCCAACAGCAAAATTTTTCTGATTCGAATGGGAACTCTGGGCCTACTATTGTTTCTCCCCTGCACAGTATCTTGGGTTCATTTCCACAGGATGAAACAGCTCACCTACTGAACCTTCCCAGAACAAGCTCTTGGATTCCTGTTCAAAATTCAACTGGGTGGCCTTCAAAGCGTGTTGCAGTGGATCCTCTTCTTTCTACTGGAGTGTCTCAGTGTGTTCTACCTCAGGTGGAGCAGCTAGGGCAGCCCCAGAGTACTGTGTCTCAAAATGCTATTACTTTACCACCTTTTCCTGGTAGGGAGTGCTCCATAGACCAAGAAGGGAGCAATGATCCTCAAAATCATCTCTTATTTGGTGTTAATATAGATTCATCATCCCTTCTCATGCCTAATGGAATGTCAACCCTTAAGGGGGTTAGCAGCAACAATGACTCCTCGACCATGCCATATCAATCTTCTAATTATCTGAATACCGCCACAGGGACTGATTCTTCATTGAATCATGGAATAACGCCCAGTATTGGCGGTGAATCAGGTTACCTGCAGAGTCCAGAAAATGCTGGACAAGGAAACCCACTGAACAAAACCTTTGTGAAGGTTTATAAGTCAGGGTCCTTTGGAAGGTCACTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGAAGTGAACTTGCTCAAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAACGATGTTCTTCTCCTTGGTGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATAAAGATACTCTCTCCTCAGGAAGTGCAGCAAATGGGGAACTCCGGTCTTGAGCTCTTGAACTCGGTTCCAATTCAAAGGCTCTCTAATGGCATCTGTGATGACTACGTGAGCCGTCAAGACCCAAGAAATTTAAGCACTGGAATAACAGCTGTGGGGTCTTTAGACTACTGA 2733 0.4599 MRLSSAGFSPPPQEGERRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNMTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPALDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGIKDDDFGLNSSLLWLRDSDRGLQSPTFQGIGVNPWMQPRFDPSMLNMQTDMYQAAAAAVQEMRGLDPSKQHSASVLQFQQQQNFPNRTASFVQAQAQMSQQPQHQQIFGNNQENQHSPQSQLQTQAHLQQHLQHQHSFNSQHHHQHQQPQLRTQQQQQQQQQVVDNQHISSAVSSMSQFVSAPPPQSPPMQAIASLCQQQNFSDSNGNSGPTIVSPLHSILGSFPQDETAHLLNLPRTSSWIPVQNSTGWPSKRVAVDPLLSTGVSQCVLPQVEQLGQPQSTVSQNAITLPPFPGRECSIDQEGSNDPQNHLLFGVNIDSSSLLMPNGMSTLKGVSSNNDSSTMPYQSSNYLNTATGTDSSLNHGITPSIGGESGYLQSPENAGQGNPLNKTFVKVYKSGSFGRSLDITKFSSYHELRSELAQMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNSGLELLNSVPIQRLSNGICDDYVSRQDPRNLSTGITAVGSLDY* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1133 910 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Vra10g1133 910 ProSiteProfiles PB1 domain profile. 777 861 IPR000270 GO:0005515
Vra10g1133 910 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra10g1133 910 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vra10g1133 910 Gene3D - 125 228 IPR015300 -
Vra10g1133 910 Pfam AUX/IAA family 770 862 IPR033389 -
Vra10g1133 910 SUPERFAMILY CAD & PB1 domains 776 852 - -
Vra10g1133 910 Gene3D - 291 363 - -
Vra10g1133 910 SMART B3_2 127 229 IPR003340 GO:0003677
Vra10g1133 910 PANTHER AUXIN RESPONSE FACTOR 1 890 - -
Vra10g1133 910 Gene3D - 774 866 - -
Vra10g1133 910 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 890 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra10g1133 910 CDD B3_DNA 126 227 IPR003340 GO:0003677
Vra10g1133 910 MobiDBLite consensus disorder prediction 746 770 - -
Vra10g1133 910 MobiDBLite consensus disorder prediction 496 552 - -
Vra10g1133 910 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1133 Vra-Chr10 17029463 17036701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1133 1 481 B3 DNA Binding Superfamily AT1G30330 85.832 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra10g1133 AUX_IAA 2.4e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1133 - - gmx:100798719 1579.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1133 10 17029463 17036701 Vra10g1133 10 17029463 17036701 ECH