Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1125 ATGTCGCTTTCCTGTACAAAAAACTTCTTCCAGAGGTTCTGGCTAGATGAATACCAAATGGGTAATATTCCCCATGGAAGCTTTTTGGCCAATGACGATCTCCTGCCATCTCTTGGAGCCAGAATTAACCAGGAAATTAGACTTAGAAGATACGTAATCTCCCCTTTCAATCCTCGCTATAGGGCTTGGGAGTTGGTACTGGTTGCTCTAGTCATATACTCAGCTTGGATTTGCCCATTTGAGTTTGCCTTTCTGCCTTACAAGGAAGACGCTCTATTCATCATAGACAACATTGTCAATGGTTTCTTTGCAATTGACATAGTGTTGACATTCTTTGTTGCATACCTTGACCACCATTCTTATCTTCTTGTGGATGATCCGAAGAGGATTGCAATCAGGTACCTATCTTCCTGGTTTGCTTTTGATGTCTGCTCAACAATACCGTTTCAGTCCTTCAGCTTCCTTTTCACGAATAGTGGCAGGGAGCTTGGCTTCAAAGTTTTTAACATGTTTCGGTTATGGCGTTTGAGACGAGTCAGTTCTCTGTTTGCAAGGCTTGAAAAGGACATTCGCTTCAATTATTTCTGGACTAGGTGCACAAAGCTCATTGCTGTAACCTTGTTTGCTGTGCACTGTGCGGGATGCTTTAACTATCTCATTGCAGATAGGTACCCAGATTCCAAAAGAACCTGGATTGGTGCTGTGTACCCAAATTTCAAAGAAGAAAGTCTTTGGGACAGATATGTCACAGCAATATACTGGTCGATTGTCACTCTTACTACCACTGGTTATGGGGATTTACATGCTGAGAACACAAGAGAGATGCTGTTTGACATCGCTTACATGCTGTTCAACTTGGGTTTAACATCCTATATCATTGGAAACATGACTAACCTTGTAGTCCACTGGACCAGCCGTACCAGAAATTTTAGAGACACAGTCAATGCAGTTTCTGAATTTGCATCAAGAAATAATTTGCCCCATCGCATACAAGATCAGATGTTATCACATATATGTTTGAGGTTTAAAACCGAAGGACTGAAGCAGCAAGAAACATTGAATGATCTTCCAAAGGCAATTCGTTCAAGCATTGCACACCATCTGTTTTTTCCTGTCGTGCAAAAGGTCTACCTTTTCCAAGGAGTCTCACATGATTTCCTTTTCCAACTGATTTCAGATATCGAAGCTGAATATTTCCCACCCAAGGAAGATGTCATATTACAAAACGAGTCCTCCACGGAACTTTATGTGTTGGTTTCAGGGGCAGTGGATCTGGTTCGCTACATCGATGGGCATGATCATGTTCATGGGAAGGCAGTTGCAGTTGATGCGTTTGGAGAGATTGGAGTTTTGTATCAGATACCCCAGCCTTTTACAGTTCGTACAACAGAACTTTCGCAGATTTTAAGACTCAACAAAACATCCTTAATGAATGTTTTACAAGCAAATCCAGGAGACGCACAGATTATTATGGATAACCTTTTAATGAGGTTGAAGGGGCGTGAAGATTTTGGCTTTGAATTTCTATGCACAGATTCTGGGCGGTTTCCAAATGAACTGCTTCAAGGAGATCATACGATACGAAGCTCTTCTCACGAGTGTACAAATAGTTCACATGAGCATTCATTAATGGGTGAAGGAGAGTGCATANATATTAGAAAGTCTGAGATCAGTTTGCGTAATGTGACTAATGATGACCATTTAGTCACTAAACATAGCGTGATCCCCGAGCATGAAACAAGAGAAGCTCGTGCCCCTGCACGCAAAGGGAATCTAGATGTTGTTGAAATTCTGCTGGAAAGAGAATCAAATCCTAACGCAAATTCCATAGGGTGGACACAGAATGCTCTAGCAAAACAGCCGAAAAACAAGAGCATTTGTGACCCAAAAAGGAGTCATGAAAAGGAGAAGTTGGATGAATTTAGAATAGAGATAGAGGAGCCAGAAATCGTCCTTGACAGGGATAGCTCAACGAGAAACAGAAGACATGGAGGTATTAGATCCATCAAGTATCCAAATGAAAAAATAACCACAAACTCCAATCCAAGAAATTCTAACTGTCCAAGTGATATAGAATCGGCAAGGCTTCCCAAAAGGAGAGTAACAATCCAGTTGCTAGATGGATGCAAGAGTAGCTCACAGGGAGGCCACGGAAAATTAATAATCCTGCCCGATTCGTTAGAAGAGCTGCTCAAAATTGCCGGTGAAAAATTTGGCGGCTTCAACCCTACAAAAGTAGTAAATACCGAGAATGCAGAGATAGATGACATAAATGTAATCCGAGATGGAGATCGTCTCTTTCTTCTGTGCCTCGATAACGAAAATTTGTGTTCGTGA 2337 0.4151 MSLSCTKNFFQRFWLDEYQMGNIPHGSFLANDDLLPSLGARINQEIRLRRYVISPFNPRYRAWELVLVALVIYSAWICPFEFAFLPYKEDALFIIDNIVNGFFAIDIVLTFFVAYLDHHSYLLVDDPKRIAIRYLSSWFAFDVCSTIPFQSFSFLFTNSGRELGFKVFNMFRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLIAVTLFAVHCAGCFNYLIADRYPDSKRTWIGAVYPNFKEESLWDRYVTAIYWSIVTLTTTGYGDLHAENTREMLFDIAYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVNAVSEFASRNNLPHRIQDQMLSHICLRFKTEGLKQQETLNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSHDFLFQLISDIEAEYFPPKEDVILQNESSTELYVLVSGAVDLVRYIDGHDHVHGKAVAVDAFGEIGVLYQIPQPFTVRTTELSQILRLNKTSLMNVLQANPGDAQIIMDNLLMRLKGREDFGFEFLCTDSGRFPNELLQGDHTIRSSSHECTNSSHEHSLMGEGECIXIRKSEISLRNVTNDDHLVTKHSVIPEHETREARAPARKGNLDVVEILLERESNPNANSIGWTQNALAKQPKNKSICDPKRSHEKEKLDEFRIEIEEPEIVLDRDSSTRNRRHGGIRSIKYPNEKITTNSNPRNSNCPSDIESARLPKRRVTIQLLDGCKSSSQGGHGKLIILPDSLEELLKIAGEKFGGFNPTKVVNTENAEIDDINVIRDGDRLFLLCLDNENLCS* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1125 778 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 778 - -
Vra10g1125 778 Gene3D Jelly Rolls 371 504 IPR014710 -
Vra10g1125 778 Pfam Cyclic nucleotide-binding domain 398 482 IPR000595 -
Vra10g1125 778 SUPERFAMILY Voltage-gated potassium channels 55 300 - -
Vra10g1125 778 CDD CAP_ED 378 491 IPR000595 -
Vra10g1125 778 SMART cnmp_10 378 495 IPR000595 -
Vra10g1125 778 ProSiteProfiles KHA domain profile. 700 778 IPR021789 -
Vra10g1125 778 Gene3D Helix hairpin bin 302 368 - -
Vra10g1125 778 SUPERFAMILY cAMP-binding domain-like 305 498 IPR018490 -
Vra10g1125 778 ProSiteProfiles cAMP/cGMP binding motif profile. 378 497 IPR000595 -
Vra10g1125 778 Pfam KHA, dimerisation domain of potassium ion channel 699 768 IPR021789 -
Vra10g1125 778 Gene3D - 61 301 - -
Vra10g1125 778 PRINTS EAG/ELK/ERG potassium channel family signature 73 80 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra10g1125 778 PRINTS EAG/ELK/ERG potassium channel family signature 96 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra10g1125 778 PRINTS EAG/ELK/ERG potassium channel family signature 107 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra10g1125 778 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra10g1125 778 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra10g1125 778 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra10g1125 778 PANTHER POTASSIUM CHANNEL AKT1 1 778 IPR045319 GO:0005249|GO:0006813
Vra10g1125 778 Pfam Ion transport protein 61 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1125 Vra-Chr10 16956373 16960948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1125 1 773 Ion Channels AT4G18290 58.718 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1125 K21867 - gmx:100811356 1348.95