Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1104 ATGGAAGAGGATGAGATTCAAGCACAGGCAGTGTGTAAGTTCCCTAGAGTTGGAAATGGACGGAGCGACCAATACCAAGAGGAAGAAGAAGAGGTAGACATAAGAAGAAGAGGTATTGGTGGCGGCGGCGGCGGCGGTGGTGGTGGAGGAGGAAGTGATGCCAGCACAAACCATTTCCAAAGCAGCTGGCACCACTCCTCGAGAATCATTAGGGTGTCTCGAGCATCTGGTGGCAAAGACAGGCACAGCAAGGTGATGACCTCAAAGGGGTTAAGAGACAGAAGGGTTAGGCTCTCGGTGACCACAGCCATTCAGTTCTACGACCTTCAAGATCGCTTGGGTTATGACCAGCCCAGTAAGGCTGTGGAGTGGTTAATCAATGCTGCTTCAGATGCTATCTCAGAGCTTCCTTCTCTCAACAACCCCTTCCCTGATACCCCTAAGCAGCCAAGTGACGAGAAAAGGCCAACCAGTGGTCAACGTGGGGTTCAACCACAGGCCTTTGATGATGCAGATGGAGACACCAATTTCCTCCACCAGAGCCAAAACCAAAGCCAGAACCTCTCTCTCTCCAAGTCTGCTTGCAGCAGCACTTCCGAGACAAGCAAGGGTTCGGGCTTGTCCCTCTCTAGGTCTGAGATCCGTGTGAACCGTGTGAAGGCAAGGGAGAGGGCAAGGGTAAGAACTGCAAAAGATAAGGGAAAAGATAGGGACAAGGAGAAGGAGAAAGAGAAAGAAAACGAGTCTGGCATTGCACACCACCACCACCACCAACACCACAATGTAAACAACCCCAACCATATGTCTCACACTGCTTCCTTCACCGAGCTTCTCACAGGTGGGATTGGGAGCACAGTAACGGTTAACCCCACGACCACAGCAAGTCCTAATGGATCATCTGTTCATCAGATCCATGAAGGTCATGACGAGGCCAATATATTCAACAAGGGAAGACAACAACAACAACAACAACAACATTGGTCTTCGACAGTGACACCTATGGACTACTTCAGCCAAGGAGGCCTATTGGTTGGACCTTCATCATCATCTGCAAGAACTCAACACCAACATCAATCTTCCTCAGGACAGTTCCAATTGGGACACGCCCTTCCCATCTCACCATTCAGTGGAGAAAACCACTCGGATCAGATGCAGCATTTTTCGTTCATGCCAGACCACCTTAACATGCCGGCCGTGGTGACTTCTTCTTCTTCTGCTTCTCAGCCCAGCGGGGGTGACAATTACAACCTCAACTTCAGCATCTCTTCGGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCCTTTTTGCCTCACCTCCAGAGGTTTCAACCTTTAGACGGATCATCCAATCTACCTTTCTTCATCGGAGCTCCCGCTCCTTCTTCTGCTCCTCCAACCATTGACAGCAACAACAATAACAACCACCACCACCTTCAGTTCTCTCCCGTCTTCGATGGCCGCTTGCAACTTTGTTATGGCGATGGAACAAGGCATTCTGACCACAAGGGCAAGGGAAAGAACTAA 1539 0.5029 MEEDEIQAQAVCKFPRVGNGRSDQYQEEEEEVDIRRRGIGGGGGGGGGGGGSDASTNHFQSSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDAISELPSLNNPFPDTPKQPSDEKRPTSGQRGVQPQAFDDADGDTNFLHQSQNQSQNLSLSKSACSSTSETSKGSGLSLSRSEIRVNRVKARERARVRTAKDKGKDRDKEKEKEKENESGIAHHHHHQHHNVNNPNHMSHTASFTELLTGGIGSTVTVNPTTTASPNGSSVHQIHEGHDEANIFNKGRQQQQQQQHWSSTVTPMDYFSQGGLLVGPSSSSARTQHQHQSSSGQFQLGHALPISPFSGENHSDQMQHFSFMPDHLNMPAVVTSSSSASQPSGGDNYNLNFSISSGLAGFNRGTLQSNSPSFLPHLQRFQPLDGSSNLPFFIGAPAPSSAPPTIDSNNNNNHHHLQFSPVFDGRLQLCYGDGTRHSDHKGKGKN* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1104 512 MobiDBLite consensus disorder prediction 22 37 - -
Vra10g1104 512 PANTHER TRANSCRIPTION FACTOR TCP24 1 512 - -
Vra10g1104 512 MobiDBLite consensus disorder prediction 215 253 - -
Vra10g1104 512 MobiDBLite consensus disorder prediction 338 383 - -
Vra10g1104 512 MobiDBLite consensus disorder prediction 338 367 - -
Vra10g1104 512 Pfam TCP family transcription factor 77 233 IPR017887 -
Vra10g1104 512 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 512 IPR005333 GO:0003700
Vra10g1104 512 ProSiteProfiles TCP domain profile. 78 136 IPR017887 -
Vra10g1104 512 MobiDBLite consensus disorder prediction 135 269 - -
Vra10g1104 512 MobiDBLite consensus disorder prediction 175 212 - -
Vra10g1104 512 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1104 Vra-Chr10 16774349 16782491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1104 56 512 TCP Transcription Factor Family AT4G18390 41.701 1.22e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra10g1104 TCP 6.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1104 - - gmx:100787772 723.391