Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1103 ATGGCTTTTGAGCCATTGGAATGGTATTGTCGGCCAGTTTCAAATGGAGTATGGACTAAAGCAGTGGAGAATAGCTTTGGCGCTTACACTCCTTGTGCGATTGATTCTCTTGTCATTTCCATTTCTTATTTGATACTTTTAGGCCTGTGCATATACCGCATTTGGTTGATTAACAAGGATTTCAAGGTGAAGAGGTTCCGTTTAAGGTCCAACATTTACAATTATGTCCTGGGATTGTTAGCTCTATATTGTGTGGCGGAGCCATTATACAGATTGATCATGGGAGTGTCAGTTCTAAATTTAGATGGCCAGACTCAATTTGCTCCATTTGAGATAGTTTCACTGATCATTGAGGCTCTTGCGTGGTGCTCTATGCTAATTTTGATTGGGGTTGAAACTAAAGTCTATATCCGAGAATCCCGATGGTTTGTCAGATTTAGTGTGATTTATGCTATTGTAGCAGATGCTGTAATGTTCAATCTCATCATTTCTTTGAAGGAGTTCTATAGCAGCTCTGTGTTCTATTTGTACATCAGTGAGGTGGTTGCTCAGGTTTTGTTTGGAGTACTTTTGCTTGTGTATCTTCCTACTTTGGATCCTTATCCAGGTTATACGCCCATTGGGAGTGACATGATTGTTGAAGTTGCATATGATGAACTTCCTGGAGGAGATATGATATGTCCTGAGAGGAGTGCCAACATATTTTCAAGAATAATGTTTTCTTGGTTGAATCCCCTCATGAAGCTAGGATATGAAAGACCACTGAATGAGAGAGATATATGGAAATTAGATACATGGGAACGGACAGATACACTAATCAATAAGTTCCAGAAATGCTGGGCTTTGGAATCTCGGAAGCCAAAACCCTGGCTTTTAAGAGCATTAAATGCAAGCCTTGGAGGAAGGTTTTGGTGGGGAGGCTTTTGCAAGATTGGCAATGATATTTCCCAATTTTTGGGCCCACTTATATTGAATCAGCTGCTACAGGCTATGCAAAATGGTGACCCGTCCTGGACTGGCTATGTTTATGCCTTCTCAATATTTGTTGGAGTGGTCTTTGGCGTGTTATGTGAAGCCCAATATTTTCAGAATGTTATGCGTGTTGGTTTCAGGTTAAGATCAACATTGGTGGCTGCTGTATTTCGCAAGTCTCTAAGACTTACTCATGAAGCACGAAAGCAATTTGCAACTGGAAAAATAACCAACTTGATGACTACTGACTGTGAGGCTCTTCAGCAAATATGCCAGTCACTTCACACTTTGTGGTCGGCTCCACTTCGAATTGTTGTTGCTTTGTTTCTTCTCTACCAAGAACTCGGTGTTGCTTCCCTTCTTGGTGCCTTGTTGCTAGTTCTTATGTTTCCGTTACAGACATTTATCATCAGTAGAATGCAGAAGTTGTCTAAGGAGGGATTACAACGTACAGACAAAAGAATTGGTCTTATGAATGAAATCTTAGCTGCCATGGACACTGTAAAGTATTATGCATGGGAGAGTAGTTTCCAGTCTAAAGTACAGATCGTCAGAAATGATGAATTATCATGGTTTCGTAAAGCATCATTACTTGGAGCGTGCAATGGATTTATACTAAATAGCATTCCAGTTTTTGTAACTGTGATTACTTTTGGAGTCTTCACCTTGCTTGGAGGGGATCTGACACCTGCTAGAGCTTTTACGTCACTTTCTCTGTTTGCTGTGCTTCGATTTCCTCTTTTCATGCTTCCTAATACTATAACTCAGGTGGTTAATGCAAATGTATCTTTGAAACGACTGGAAGATTTGCTCTTAGCAGAAGAAAGAATACTTCTACCAAATCCTCCTCTTGATCCAATTTTACCAGCTGTGTCAATCAAGAATGGATACTTTTCTTGGGATGCAAAGGCAGAGCGTCCTACATTGTCAAACATAAATTTGGAAATACCTGTTGGCTGTCTAGTTGCAGTTGTTGGCAGTACAGGAGAAGGGAAGACATCGTTAGTGTCTGCAATGCTTGGAGAGATGCCTCCAATTGGAGATTCAACCATTGTTTTGAGAGGAACAGTTGCTTATGTACCCCAAGTTTCATGGATTTTTAATGCAACTGTACGGGATAATGTTTTGTTTGGTTCTGTCTTTGACACAACAAGATATCAAAGGGCAATAAATGTGACCGAACTGCAACATGACCTTGACTTACTTCCTGGTGGTGATCTTACTGAAATTGGGGAAAGAGGGGTAAACATCAGTGGTGGCCAAAAGCAGAGAGTTTCCATGGCTAGAGCTGTGTACTCCAATTCTGATGTGTATATCTTTGATGACCCCCTAAGTGCTCTGGATGCGCATGTTGCTAGACAGGTTTTTGATAAATGCATCAAGGGAGAACTGAGAGGGAAGACTCGAGTTCTTGTTACGAATCAGCTGCATTTCCTTTCCCAGGTTGATAGAATCATTTTGGTCCATGAAGGTATGGTGAAGGAGGAGGGAACTTTTGAGGAACTCTCTAACCATGGACCGCTGTTCCAGAAGCTTATGGAAAATGCAGGAAAGATGGAGGAGTATGAAGAAGAAATTGTAGATACTGAAACTACAGATCAGAAGGCCTCTTCAAAATCAGTGGCCAACGGAGAAGTTGATGGTTTTGCAAAGAGTGGAAGTAAACCTAAAGAAGGAAAATCAGTCCTTATTAAACAAGAAGAACGGGAAACAGGGGTAGTCAGCTTGGGTGTTCTAATCAGGTACAAGAATGCATTAGGAGGGCTTTGGGTTGTTCTGATACTATTTGGATGCTATATAGCTACAGAAACATTGCGGATATCTAGTAGCACATGGTTAAGCCATTGGACTGATCAAAGTGCTACAGAGGGTTACAACCCGGCCTTCTACAATATGATATATGCAGCTCTATCATTTGGTCAGGTTTTGGTGACTTTAACAAATTCTTACTGGTTAATCATATCAAGTCTTTATGCAGCCAGAAGGTTGCACGAAGCCATGCTTAGCTCCATATTACGGGCTCCAATGGTGTTTTTCCAAACAAATCCGCTTGGAAGAGTTATCAACAGGTTTGCAAAGGATCTAGGTGACCTTGATCGGAATGTAGCTCCATTTGTGAATATGTTTCTAGGTCAAATGTCCCAGCTTCTTTCAACCTTCATCCTCATAGGCATTGTCAGCACAATGTCCTTGTGGGCAATACTGCCATTGTTGGTGTTGTTTTACGTAGCTTATCTATATTATCAGAGCACTGCTCGTGAAGTGAAGCGCTTAGATTCGATTAGCAGATCTCCTGTTTATGCACAGTTTGGAGAAGCATTGAATGGCTTATCAACAATTCGAGCTTACAAAGCATATGATCGTATGGCTGATATAAATGGGAAAGCCATGGACAACAACATTCGATTCACATTGGTGAACATAAGCGCAAACAGATGGCTAGCAATCCGATTGGAAACCGTGGGAGGCATCATGATATGGTTTACTGCAACCTTTGCTGTCATGCAGAATGGTAGAGCGGAAAACCAGCAAGTATTCGCCTCCACCATGGGGTTGTTACTTAGCTATACTCTGAACATTACTACTTTGCTTACCAGTGTGTTGAGGCTTGCAAGTTTGGCGGAGAATAGTTTAAATGCAGTTGAACGGATTGGCACTTACATAGATTTGCCTTCTGAGGCTCCCTCTATAATTGATGATAATCGCCCTCCTCCTGGCTGGCCATCTTCAGGTTCAATAAGATTTGAAGATGTTGTTCTTCGCTATCGTCCTGAATTGCCTCCTGTGTTGCATGGCTTGTCTTTCACCATTTTCCCAAGTGATAAGGTTGGCATTGTTGGGAGGACAGGTGCAGGAAAATCAAGCATGCTCAATGCATTGTTTCGAATTGTAGAGTTGGAACGAGGAAGAATATTGATAGATGATTATGATGTTGCAAAGTTTGGGCTTGCTGATTTGCGTAATGTTCTGGGCATCATACCACAAGCTCCAGTTCTCTTTTCAGGAACTGTGAGATTTAATCTGGATCCTTTTAATGAACACAATGATGCTGATCTCTGGGAGGCTCTGGAGAGGGCACATTTGAAGGATGTGATACGGAGGAATTCTTTGGGGCTGGATGCTGAGGTATCCGAGGCAGGAGAGAACTTCAGTGTTGGACAAAGGCAACTGTTGAGTCTTTCTCGGGCTTTATTGCGTAGATCAAAGATATTAGTACTTGACGAAGCAACTGCAGCAGTTGATGTTAGAACGGATGCACTCATACAAAAAACAATCCGAGAGGAATTCAAATCCTGTACAATGCTCATTATTGCTCATCGCCTTAACACTATTATTGATTGTGATCGGATTCTCTTGCTTGATGGTGGTAAGGTTCTTGAATATGATACGCCTGAGGAGCTGCTGTCAAATGAAGGTAGTTCTTTCTCAAAGATGGTCCAAAGCACAGGAGCTGCAAATGCACAATATTTGCGCAGCTTAGCACTTGGCGGGGATAAATCTGAAAGAGAAGAAAATAGGAATCTAGATGGACATAGAAAATGGCTGGCTTCTTCAAGGTGGGCTGCAGCTGCCCAATTTGCTCTCGCCGTTAGTCTCACCTCATCCCAGAATGACCTACAACGGTTGGAAGTGGAAGATGAGAATAGTATTTTGAAGAAGACAAAGGATGCCCTGATAACTTTGCAGGGGGTTTTGGAAAGGAAGCATGATAAAGAAATTGAGGAATCTTTAGAGCAGCGTCAAATATCCCCCGAGGGATGGTGGTCATCTCTCTTTAAAATGATTGAAGGTATTGCTATGATGAGCAGATTGGCCAGGAACAGGCTCCATCAATCAGACTTTGGTTTTGAGGACAGATCAATTAACTTCGATGAAATTGATATGTAG 4860 0.4175 MAFEPLEWYCRPVSNGVWTKAVENSFGAYTPCAIDSLVISISYLILLGLCIYRIWLINKDFKVKRFRLRSNIYNYVLGLLALYCVAEPLYRLIMGVSVLNLDGQTQFAPFEIVSLIIEALAWCSMLILIGVETKVYIRESRWFVRFSVIYAIVADAVMFNLIISLKEFYSSSVFYLYISEVVAQVLFGVLLLVYLPTLDPYPGYTPIGSDMIVEVAYDELPGGDMICPERSANIFSRIMFSWLNPLMKLGYERPLNERDIWKLDTWERTDTLINKFQKCWALESRKPKPWLLRALNASLGGRFWWGGFCKIGNDISQFLGPLILNQLLQAMQNGDPSWTGYVYAFSIFVGVVFGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEARKQFATGKITNLMTTDCEALQQICQSLHTLWSAPLRIVVALFLLYQELGVASLLGALLLVLMFPLQTFIISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKYYAWESSFQSKVQIVRNDELSWFRKASLLGACNGFILNSIPVFVTVITFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNTITQVVNANVSLKRLEDLLLAEERILLPNPPLDPILPAVSIKNGYFSWDAKAERPTLSNINLEIPVGCLVAVVGSTGEGKTSLVSAMLGEMPPIGDSTIVLRGTVAYVPQVSWIFNATVRDNVLFGSVFDTTRYQRAINVTELQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVARQVFDKCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEELSNHGPLFQKLMENAGKMEEYEEEIVDTETTDQKASSKSVANGEVDGFAKSGSKPKEGKSVLIKQEERETGVVSLGVLIRYKNALGGLWVVLILFGCYIATETLRISSSTWLSHWTDQSATEGYNPAFYNMIYAALSFGQVLVTLTNSYWLIISSLYAARRLHEAMLSSILRAPMVFFQTNPLGRVINRFAKDLGDLDRNVAPFVNMFLGQMSQLLSTFILIGIVSTMSLWAILPLLVLFYVAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKAMDNNIRFTLVNISANRWLAIRLETVGGIMIWFTATFAVMQNGRAENQQVFASTMGLLLSYTLNITTLLTSVLRLASLAENSLNAVERIGTYIDLPSEAPSIIDDNRPPPGWPSSGSIRFEDVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDYDVAKFGLADLRNVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDGGKVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLALGGDKSEREENRNLDGHRKWLASSRWAAAAQFALAVSLTSSQNDLQRLEVEDENSILKKTKDALITLQGVLERKHDKEIEESLEQRQISPEGWWSSLFKMIEGIAMMSRLARNRLHQSDFGFEDRSINFDEIDM* 1620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1103 1619 Pfam ABC transporter 633 768 IPR003439 GO:0005524
Vra10g1103 1619 Pfam ABC transporter 1254 1402 IPR003439 GO:0005524
Vra10g1103 1619 SUPERFAMILY ABC transporter transmembrane region 287 595 IPR036640 GO:0005524|GO:0016021
Vra10g1103 1619 CDD ABC_6TM_ABCC_D2 916 1212 IPR044726 GO:0140359
Vra10g1103 1619 Gene3D ABC transporter type 1, transmembrane domain 880 1218 IPR036640 GO:0005524|GO:0016021
Vra10g1103 1619 Gene3D ABC transporter type 1, transmembrane domain 281 601 IPR036640 GO:0005524|GO:0016021
Vra10g1103 1619 CDD ABCC_MRP_domain1 615 815 - -
Vra10g1103 1619 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524
Vra10g1103 1619 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 35 1514 - -
Vra10g1103 1619 Coils Coil 843 863 - -
Vra10g1103 1619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1237 1471 IPR003439 GO:0005524
Vra10g1103 1619 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g1103 1619 CDD ABCC_MRP_domain2 1235 1455 - -
Vra10g1103 1619 ProSitePatterns ABC transporters family signature. 1374 1388 IPR017871 GO:0005524
Vra10g1103 1619 SUPERFAMILY ABC transporter transmembrane region 914 1217 IPR036640 GO:0005524|GO:0016021
Vra10g1103 1619 SMART AAA_5 642 820 IPR003593 -
Vra10g1103 1619 SMART AAA_5 1263 1456 IPR003593 -
Vra10g1103 1619 Gene3D - 611 866 IPR027417 -
Vra10g1103 1619 Pfam ABC transporter transmembrane region 306 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g1103 1619 Pfam ABC transporter transmembrane region 916 1174 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g1103 1619 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 917 1200 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra10g1103 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1227 1463 IPR027417 -
Vra10g1103 1619 CDD ABC_6TM_ABCC_D1 305 591 IPR044746 GO:0140359
Vra10g1103 1619 PANTHER ABC TRANSPORTER C FAMILY MEMBER 1 35 1514 - -
Vra10g1103 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 838 IPR027417 -
Vra10g1103 1619 Gene3D - 1220 1473 IPR027417 -
Vra10g1103 1619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 839 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1103 Vra-Chr10 16741641 16762112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1103 608 867 Calmodulin-binding Proteins AT2G36910 28.364 3.70e-27 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1103 - - gmx:100795004 2907.09