Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1102 ATGTTAATTCAGACTACCTGTGCTCGGGATTCTGGGATGAGTTCAGAGACTGTCAATTCCACGCAACGAACTTCCATGAGCAACGAGAGCGTTTGCAGCACCAGCTTCAGCCGCCTCTCCTTCGACCTCCCTCCTTCCTCCTCATCGCCCGAGAGCCTCTTTGTCAAGCCCCACCGCTCCTCCGACTTCGCTTACTCTGCCATCTTCCGTCGCCAGTCCGCCCTCACCTTCCGTGACTTCCACCTCCTCCGCCGCATCGGCGCCGGCGACATCGGCACTGTGTACCTCTGTCGCCTTCGCCACGACGAGGACGAGTGCTTCTACGCGATGAAGGTGGTGGACAAGGAGGCCGTGGCGCTGAAGAAGAAGGCGCAGAGAGCGGAGATGGAGAGAAAGATTCTGAAGATGGTTGACCACCCCTTCCTCCCTACGCTCTACGCGGAGTTCGAGGCCTCGCATTTCTCTTGCATTGTGATGGAGTATTGCTCCGGTGGAGACTTGCACTCCCTTCGACACAACCACCCTAACAAACGCTTCTCTCTCTCCTCTGCCAGGTTTTACGCGGCTGAAGTACTGGTGGCGTTGGAGTATCTCCACATGCTGGGAATAATCTACAGGGATCTAAAGCCAGAAAACGTGTTGGTCAGATCAGACGGTCACATCATGCTTTCTGATTTCGATCTCTCTCTCTGCTCCCATGCAATCCCCGCCGTTGAATCCCCTGACTCTTCTCTAGATCCTGCGTTCACACGCACGTTACCCTACACCCGTCAGTACTCCACTCCCTTCTCCTGCCTCTCCAACCGCGTCTTCCGCTCCAAGAAGCTCCAAACCCTCCAACCCAACCGCCTCTTTGTGGCCGAACCGGTTGGGGCTCGCTCCTGCTCCTTCGTGGGGACACACGAGTACGTCTCACCGGAAGTGGCCTCCGGAAACTCCCACGGCAACGCCGTCGACTGGTGGTCCTTCGGAATATTCATCTTCGAGATGGTGTACGGTCGCACCCCCTTCGCGGGCCCATCCAACGAGGCTACGCTGCGGAACATCATAAAAAACCCCCTCGCCTTTCCCACCGCCACGCCCTCCACCACACTTGAAATGCATGCGCGGGACCTCATCTCCGGGTTGCTCAACAAGGACCCGAACCGCAGGCTTGGGTCGAAGCGCGGCGCCGCCGACGTCAAGAAGCATCCTTTCTTCGCGGGGCTCAATCTGGCGCTGATACGAATGGTGACGCCGCCGGAGGTTCCCTCATCCCTCAGAAGACAGAAAACGACGCTGTTTTACCCCGCTAACGATAACGGCAACGTAAATAACAGTAGACAGGAGCTAACGGCGTTTGATTACTTTTGA 1353 0.5706 MLIQTTCARDSGMSSETVNSTQRTSMSNESVCSTSFSRLSFDLPPSSSSPESLFVKPHRSSDFAYSAIFRRQSALTFRDFHLLRRIGAGDIGTVYLCRLRHDEDECFYAMKVVDKEAVALKKKAQRAEMERKILKMVDHPFLPTLYAEFEASHFSCIVMEYCSGGDLHSLRHNHPNKRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSHAIPAVESPDSSLDPAFTRTLPYTRQYSTPFSCLSNRVFRSKKLQTLQPNRLFVAEPVGARSCSFVGTHEYVSPEVASGNSHGNAVDWWSFGIFIFEMVYGRTPFAGPSNEATLRNIIKNPLAFPTATPSTTLEMHARDLISGLLNKDPNRRLGSKRGAADVKKHPFFAGLNLALIRMVTPPEVPSSLRRQKTTLFYPANDNGNVNNSRQELTAFDYF* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1102 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Vra10g1102 450 CDD STKc_phototropin_like 78 417 - -
Vra10g1102 450 Gene3D Transferase(Phosphotransferase) domain 1 293 418 - -
Vra10g1102 450 ProSiteProfiles Protein kinase domain profile. 80 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1102 450 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 449 - -
Vra10g1102 450 SMART serkin_6 80 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1102 450 PANTHER FLIPPASE KINASE 1-RELATED 5 449 - -
Vra10g1102 450 Pfam Protein kinase domain 80 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1102 450 Pfam Protein kinase domain 295 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1102 450 SUPERFAMILY Protein kinase-like (PK-like) 60 421 IPR011009 -
Vra10g1102 450 Coils Coil 110 130 - -
Vra10g1102 450 Gene3D Transferase(Phosphotransferase) domain 1 162 230 - -
Vra10g1102 450 Gene3D Phosphorylase Kinase; domain 1 78 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1102 Vra-Chr10 16731192 16733810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1102 10 450 AGC Kinase Gene Family AT2G34650 67.114 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vra10g1102 Pkinase 9.9e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1102 - - gmx:100795536 775.778