Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1098 ATGAGTTCTGTTGTTCATGCTAGTGTTATCGCAATGGGAGATTTAGAGAGAATGGGCAGAGAACTCAAATGCCCAATCTGTTGGAGTTTGTTCGATTCTGCGGTTTCGCTTACCTGCAATCATCACTTCTGCAACTCGTGTATTGTAAAGTCCATGAAATCGGCCTCTGCTTGTCCTGTATGTAAAATTCCGTTCACTCGTCGAGAGGTTCGCCCTGCTCCTCATATGGACAACTTGGTCAATATATATAAGAACATGGAAGTTGCTTCAGGAATTAATATATTTGTTACCCAGAATGTATCTCAAGCTAATTTATCGGATGTGGAAAAACAATGTGATGGTAATGCCGACTTTGGCAAAGTGGAAGCTGGTGGATCTCACAAAGGTCATGTGCAAGAGAAGAAAACCCGGAAGAAAAAGAAGGCGAAGAAGATAGTCCAGGTCAACATGGAAAGTTCAGGCTCTGGCCTACCAAAACCTTCTTTTCCAGCCAAGAAAAGGGTGCTGGTGCCACAAAATATTCTTTCAGAGACTCCAATGAAAAATTTGAAGCTTGGAGATTGTGTTAGTGAAATTAACAAAGAGAAAGGAGTGGAAAATGTTCCTCTCATTGGAAGTGAAATGCCTCTACAAAGTGAAAAATCTGTTCCTGTTCTTTCACCTTTCTTTTGGTTGAGAGAGGAAAAAGATGGTGAAAAGTCGAGCCAACCAACTGACGAGGATCAATTTATTGATGGATCAACACCAAATCCTCCTTCATTTAGTGACCTCAGGGACTCGGATGATGAAAACACTTCTAATGTCGCTCCATTCGATGAGAGGCAAAATCAAATCTCTGTTAATTTATTTGATAGTGAGATGTTTGAATGGACACAAAGGCCTTGCTCTCCAGAATTATTTTCAAGTCCCTCTAAAATGCAGCTGCAGGTCATGGATACTTACGAGGATGATGAAGATCAAGATGAATTGGTGGCTGCCTCACAGGAGCTGGACGCAAATCTACCAAGTACTGATGCTGACAACATAAAATTTGAGAATCCCAAAGGAAATAAAACAGCTGATGCATTACCACCAAATGTTTCTCCTCTAATTAGAAGTTCTGTTGATATAAATGGACAAATAAAGTCTAGGAAAAGGGGAAGGAAGGCTAGGGAAAAAATTAGGCACGAGCAGATTGTCGAACCAAAAAATTCAATTGATGGAATGCATGTTGATGGACATGTATCACTAGAAGTCACTCAGGAACGAGCAATGGACCACAAACCCAAATCTTGTAATCTGGGGAAGGCTAGTAGAAGGGGCAAGAAGGTTTGTTTCAATACCAGTTCAGTTCCAACATCTACAAGTGCATGTACAGTCCCTGATACGTCAGGAGTTTTAAGTATTGATGAAATGGAGATGGTTGCAATTTCATGTATTTCGCCATCTAAACAAGAAAATGGGAAGCATTGTCCTCTGGAGATTGCTGGAAAAAGCCAGAAGATAATATCTGGAAAACAAATAAAGTCTAGGAAAAGGGGAAGGAAGGCTAGGGCAAAAATTAGGCATGAGCAGATTGTCGAACCAAAAAATTCAATTGATGGAATGCATGTTGATGGACATGTATCATTAGAAGTCACTCAGGAACGAGCATTGGACGACAAACCGAAATCTTGTAATATGGGGACGGCTAGTAGAAGGGGCAAGAAGGTTTGTTTCAATACCAGTTCAGTTCCAACATCTTCTAGTGCATGTACAGTCCCTGATTCGTCAGGAGTTTTAAGTATTGATGAAATGGAGATGGTTGCAAATTCATGTATTTCGCCATCTAAACAAGAAAATGGGAAGCATTGTCCTCTGGAGATTGCTGGAAAAAGCCAGAAGATAATATCTGGAAAACAACATATGGACCCAACCGAAGAGTTTGCCGGTTCTGATTCATCCCTTTTCAGTCTGCAGACAAATAGTAACGTGAATACCTCTAAATGCAAGCAATCCAAAAACATATTTACTAGAAAATCTATATCTGGCAGTAAAAAGTTGAGAAATACTGAAAGGTCAAAACTTTCTTCTGAATGTACCTCTATCACTAAAAAGGCTGAAGAAATTCTACGTAATGAAAGTGTTCATCACTGTCCTCATGTCAGCGATATGAATGATACATCAAAAGAGAAACATCGTTCTTTGACTGATAAAACAGTTTTAAGGAAATGTGAGAGCTATGTCAAGAAGTATCAGTGTTTTTTCTGTCTCTCATCAGAAGAATCAGAGGTTTCTGGCCCTATGGTGCATTATCTTGATGGCAAACCTGTACCTGCAGATTATGAAGGGGGGTTTAAAGTCACACATTGTCACAGGAACTGCACAGAATGGGCCCCCAATGTATATTTTGACGGTGAAAATGCAATAAATCTTGAAGCTGAGATAAGTAGAAGTCGAAGAATTAAATGTAGTTTTTGTGGACTTAAAGGGGCCGCACTTGGTTGTTATGAGAAAAGTTGTCGCAGGAGCTTTCATGTTCCTTGTGCCAAGTGGACTTCTTTATGTCGTTGGGATACGCAAAACTTCGTCATGTTATGTCCTCTACATGAATCCTCCACGTTGCCCTGTGAAGATTCAGGTTCCCAAAAAAGGAGCAAGAAAGGCCAAGGTAGAGATGGCAAAAACCATGGTCCTAGTCTTGACACTATAACCCAAACTCGGGCTGATCATAGATCTTACAAGAAAATTGTTCTATGTTGTTCTGCTCTATCCGTACAGGAGAAGGACATTGTTTCCAAATTCGAAAGTGTATCTAAAGTTACAGTTGTGAAAAATTGGGACTCGAGTGTCACCCATGTTATAGCATCAACGGATGAAAACGGGGCATGCAGAAGAACCCTGAAAGTATTGCTGGGTATCCTGGAGGGAAAGTGGATTCTAAATGTTGAGTGGATCAAAGCTTGCATGAAGGAAATGAATCCTGTTTGTGAGGAGCGTTATGAAATTAATGTTGACATCCACGGAATTAGGGATGGTCCTCGTCTAGGACGACTAAGAGTATTGAACACGCAACCAAAGCTTTTTTATGGCTACAAGTTTTATTTTATGGGAGATTTTATACCTTCATACAAGGTGTATCTGCAACAACTTGTGGTTGCTGCTGGAGGGATAATTCTGCATAGAAAACCAGTGTCTTGTGACCAAAACTTAATGTTATCAGATACACATTCATATCAGAACTTCATAGTTTACAGCCTCGAGCTGCCGGATAAATGTAAGCCTTCAGAAATGGATACAATTTGCAGACAAAGGTGTCATGATGCAGAGGTTGTGGCAAGCTCTACAGGCTCAAAGGTTGTAACTAATACATGGATTCTTAATTCAATTGCAGCCTGCAAACTGCAATGA 3369 0.4028 MSSVVHASVIAMGDLERMGRELKCPICWSLFDSAVSLTCNHHFCNSCIVKSMKSASACPVCKIPFTRREVRPAPHMDNLVNIYKNMEVASGINIFVTQNVSQANLSDVEKQCDGNADFGKVEAGGSHKGHVQEKKTRKKKKAKKIVQVNMESSGSGLPKPSFPAKKRVLVPQNILSETPMKNLKLGDCVSEINKEKGVENVPLIGSEMPLQSEKSVPVLSPFFWLREEKDGEKSSQPTDEDQFIDGSTPNPPSFSDLRDSDDENTSNVAPFDERQNQISVNLFDSEMFEWTQRPCSPELFSSPSKMQLQVMDTYEDDEDQDELVAASQELDANLPSTDADNIKFENPKGNKTADALPPNVSPLIRSSVDINGQIKSRKRGRKAREKIRHEQIVEPKNSIDGMHVDGHVSLEVTQERAMDHKPKSCNLGKASRRGKKVCFNTSSVPTSTSACTVPDTSGVLSIDEMEMVAISCISPSKQENGKHCPLEIAGKSQKIISGKQIKSRKRGRKARAKIRHEQIVEPKNSIDGMHVDGHVSLEVTQERALDDKPKSCNMGTASRRGKKVCFNTSSVPTSSSACTVPDSSGVLSIDEMEMVANSCISPSKQENGKHCPLEIAGKSQKIISGKQHMDPTEEFAGSDSSLFSLQTNSNVNTSKCKQSKNIFTRKSISGSKKLRNTERSKLSSECTSITKKAEEILRNESVHHCPHVSDMNDTSKEKHRSLTDKTVLRKCESYVKKYQCFFCLSSEESEVSGPMVHYLDGKPVPADYEGGFKVTHCHRNCTEWAPNVYFDGENAINLEAEISRSRRIKCSFCGLKGAALGCYEKSCRRSFHVPCAKWTSLCRWDTQNFVMLCPLHESSTLPCEDSGSQKRSKKGQGRDGKNHGPSLDTITQTRADHRSYKKIVLCCSALSVQEKDIVSKFESVSKVTVVKNWDSSVTHVIASTDENGACRRTLKVLLGILEGKWILNVEWIKACMKEMNPVCEERYEINVDIHGIRDGPRLGRLRVLNTQPKLFYGYKFYFMGDFIPSYKVYLQQLVVAAGGIILHRKPVSCDQNLMLSDTHSYQNFIVYSLELPDKCKPSEMDTICRQRCHDAEVVASSTGSKVVTNTWILNSIAACKLQ* 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1098 1122 MobiDBLite consensus disorder prediction 228 273 - -
Vra10g1098 1122 SUPERFAMILY RING/U-box 13 86 - -
Vra10g1098 1122 MobiDBLite consensus disorder prediction 867 881 - -
Vra10g1098 1122 Pfam BRCA1 C Terminus (BRCT) domain 928 976 IPR001357 -
Vra10g1098 1122 SMART PHD_3 809 857 IPR001965 -
Vra10g1098 1122 ProSitePatterns Zinc finger RING-type signature. 39 48 IPR017907 -
Vra10g1098 1122 Gene3D BRCT domain 1011 1119 IPR036420 -
Vra10g1098 1122 SMART BRCT_7 898 979 IPR001357 -
Vra10g1098 1122 SMART BRCT_7 1012 1119 IPR001357 -
Vra10g1098 1122 Gene3D BRCT domain 899 1005 IPR036420 -
Vra10g1098 1122 SUPERFAMILY BRCT domain 1012 1122 IPR036420 -
Vra10g1098 1122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 734 859 IPR013083 -
Vra10g1098 1122 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 501 1122 IPR031099 GO:0006281|GO:0006974
Vra10g1098 1122 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 13 495 IPR031099 GO:0006281|GO:0006974
Vra10g1098 1122 Pfam PHD-like zinc-binding domain 778 856 - -
Vra10g1098 1122 MobiDBLite consensus disorder prediction 123 163 - -
Vra10g1098 1122 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 501 1122 - -
Vra10g1098 1122 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 13 495 - -
Vra10g1098 1122 MobiDBLite consensus disorder prediction 240 255 - -
Vra10g1098 1122 ProSiteProfiles Extended PHD (ePHD) domain profile. 737 857 IPR034732 -
Vra10g1098 1122 ProSiteProfiles BRCT domain profile. 928 989 IPR001357 -
Vra10g1098 1122 ProSiteProfiles BRCT domain profile. 1010 1122 IPR001357 -
Vra10g1098 1122 MobiDBLite consensus disorder prediction 860 890 - -
Vra10g1098 1122 Pfam Zinc finger, C3HC4 type (RING finger) 23 61 - -
Vra10g1098 1122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 92 IPR013083 -
Vra10g1098 1122 ProSiteProfiles Zinc finger RING-type profile. 24 62 IPR001841 -
Vra10g1098 1122 CDD BRCT_Bard1_rpt1 903 978 - -
Vra10g1098 1122 SUPERFAMILY BRCT domain 903 1000 IPR036420 -
Vra10g1098 1122 SMART ring_2 810 856 IPR001841 -
Vra10g1098 1122 SMART ring_2 24 61 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1098 Vra-Chr10 16705582 16711354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1098 17 157 RAD5 or RAD16-like Gene Family AT5G43530 25.153 2.87e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1098 K10683 - gmx:100804958 934.48