Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1097 ATGTCGCTTTCCTGTGCCAAAAACTTCTTCCAGAGGTTCTGGCTAGATGAATACCAAATGGGTAATATTCCCCATGGAAGCTTTTTGGCCAATGATGATCTCCTGCCATCTCTTGGAGCCAGAATTAACCAGGAAATTAGACTTAGAAGATACGTAATCTCCCCTTTCAATCCTCGCTATAGGGCTTGGGAGTTGGTACTGGTTGTTTTAGTCATATACTCAGCTTGGATTTGCCCATTTGAGTTTGCCTTTCTGCCTAACAAGGAAAATGCTCTCTTCATCATAGACAACATTGTCAATGGTTTCTTTGCAATTGACATAGTGTTGACATTCTTTGTTGCATACCTTGACCACCATTCTTATCTTCTTGTGGATGATCCGAAGAGGATTGCAATCAGGTACCTATCTTCCTGGTTTGCTTTTGATGTCTGCTCAACAATACCGTTTCAGTCCTTCAGCTTCCTCTTCACGAATGGTGGCAGTGAGCTTGGCTTCAAAGTTTTTAACATGTTTCGGTTATGGCGTTTGAGACGAGTCAGTTCTCTGTTTGCAAGGCTTGAAAAGGACATTCGCTTCAATTATTTCTGGACTAGGTGCACAAAGCTCATTGCTGTGACCTTGTTTGCTGTGCACTGTGCGGGATGCTTTAACTATCTCATTGCAGATAGGTACCCAGATTCCAAAAGAACCTGGATTGGTGCTGTGTACCCAAATTTCAAAGAAGAAAGTCTTTGGGACAGATATGTCACAGCAATATACTGGTCGATTGTCACTCTTACTACCACTGGTTATGGGGATTTACATGCTGAGAACACAAGAGAGATGCTGTTTGATATCGCTTACATGCTGTTCAACCTGGGTTTAACATCCTATATCATTGGAAACATGACTAACCTTGTAGTCCACTGGACCAGCCGTACCAGAAATTTTAGAGACACAGTCAAAGCAGCTTCTGAATTTGCATCAAGAAATCATTTGCCCCATCGCATACAAGATCAGATGTTATCACATATATGTTTGAGGTTTAAAACCGAAGGACTGAAGCAACAAGAAACATTGAATGATCTTCCAAAGGCAATTCGTTCAAGCATTGCACACCATCTGTTTTTTCCTGTCGTGCAAAAGGTCTACCTTTTCCAAGGAGTCTCACATGATTTCCTTTTCCAACTGATTTCAGATATGGAAGCTGAATATTTCCCACCCAAGGAAGATGTCATACTACAAAACGAGTCCTCCACGGAACTTTATGTGCTGGTTTCAGGGGCAGTGGATCTGGTTCGCTACATCGATGGGCATGATCATGTAAAGTTGTTCAAGATCATGACATTTTATTCAGCTTCAAGATATGAAATAACTGAATATAACTTTCTCTCTCTACATAAAACAATTCAGGTTCATGGAAAGGCAGTTGCAGTTGATGCGTTTGGAGAGATTGGAGTTTTGTATCAGATACCCCAGCCTTTTACAGTTCGTACAACAGAACTTTCGCAGATTTTAAGACTCAACAAAACATCCTTAATGAATGTTTTACAAGCAAATCCAGGAGACGCACAGATTATAATGGATAACCTTTTAATGAGGTTGAAGGGGCGTGAAGATTTTGGCTTTGAATTTCTATGCACAGATTCTGGGCGGTTTCCAAATGAACTGCTTCAAGGAGATCATACGATACGAAGCTCTTCTCACGAGTGTACAAATAGTTCACATGAGCATTCATTAATGGGTGAAGGAGAGTGCATANATATTAGAAAGTCTGAGATCAGTTTGCGTAATGTGACTAATGATGACCATTTAGTCACTAAACATAGCGTGATCCCCGAGCATGAAACAAGAGAAGCTCGTGCCCCTGCACGCAAAGGGAATCTAGATGTTGTTGAAATTCTGCTGGAAAGAGAATCAAATCCTAACGCAAATTCCATAGGGTGGACACAAAATGCTCTAGCAAAACAGCCGAAAAACAAGAGCATTTATGATCCAAAAAGGAGTCATGAAAAGGAGAAGTTGGATGAATTTAGAATAGAGATAGAGGAGCCAGAAATCCTCCTTGACAGGGATAGCTCAACGAGCAACAGAAGACATGGTGGGATTAGATCTATCGAGTATCCAAAAGAAAAAATAAGCACAAACTCCAATTCAAGAAATTCTAACTGTCGTATCAAATCGGCAAGGCTTCCCAAGAAGAGAGTAACAATCCAGTTGCTAGATGGATGCAGGAGTAGCTCACAGGGAAGCCACGGAAAATTAATAATCCTGCCCGATTCGTTAGAAGAACTGCTCAAAATTGCAGGTGAAAAATTTGGCGGCTTCAACCCTACGAAAGTAGTAAATACAGAGAATGCAGAGATAGATGACATAAATGTAATCCGAGATGGAGATCGTCTCTTTCTTCTGTGCTGCGATAACGAAAATTTGTGTTCGTGA 2421 0.4093 MSLSCAKNFFQRFWLDEYQMGNIPHGSFLANDDLLPSLGARINQEIRLRRYVISPFNPRYRAWELVLVVLVIYSAWICPFEFAFLPNKENALFIIDNIVNGFFAIDIVLTFFVAYLDHHSYLLVDDPKRIAIRYLSSWFAFDVCSTIPFQSFSFLFTNGGSELGFKVFNMFRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLIAVTLFAVHCAGCFNYLIADRYPDSKRTWIGAVYPNFKEESLWDRYVTAIYWSIVTLTTTGYGDLHAENTREMLFDIAYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVKAASEFASRNHLPHRIQDQMLSHICLRFKTEGLKQQETLNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSHDFLFQLISDMEAEYFPPKEDVILQNESSTELYVLVSGAVDLVRYIDGHDHVKLFKIMTFYSASRYEITEYNFLSLHKTIQVHGKAVAVDAFGEIGVLYQIPQPFTVRTTELSQILRLNKTSLMNVLQANPGDAQIIMDNLLMRLKGREDFGFEFLCTDSGRFPNELLQGDHTIRSSSHECTNSSHEHSLMGEGECIXIRKSEISLRNVTNDDHLVTKHSVIPEHETREARAPARKGNLDVVEILLERESNPNANSIGWTQNALAKQPKNKSIYDPKRSHEKEKLDEFRIEIEEPEILLDRDSSTSNRRHGGIRSIEYPKEKISTNSNSRNSNCRIKSARLPKKRVTIQLLDGCRSSSQGSHGKLIILPDSLEELLKIAGEKFGGFNPTKVVNTENAEIDDINVIRDGDRLFLLCCDNENLCS* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1097 806 PRINTS EAG/ELK/ERG potassium channel family signature 96 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra10g1097 806 PRINTS EAG/ELK/ERG potassium channel family signature 107 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra10g1097 806 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra10g1097 806 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra10g1097 806 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra10g1097 806 CDD CAP_ED 378 521 IPR000595 -
Vra10g1097 806 ProSiteProfiles KHA domain profile. 728 806 IPR021789 -
Vra10g1097 806 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 436 - -
Vra10g1097 806 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 463 806 - -
Vra10g1097 806 Pfam Ion transport protein 61 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vra10g1097 806 Pfam KHA, dimerisation domain of potassium ion channel 727 796 IPR021789 -
Vra10g1097 806 ProSiteProfiles cAMP/cGMP binding motif profile. 378 527 IPR000595 -
Vra10g1097 806 Gene3D - 61 301 - -
Vra10g1097 806 PANTHER POTASSIUM CHANNEL AKT1 463 806 IPR045319 GO:0005249|GO:0006813
Vra10g1097 806 PANTHER POTASSIUM CHANNEL AKT1 1 436 IPR045319 GO:0005249|GO:0006813
Vra10g1097 806 SUPERFAMILY Voltage-gated potassium channels 55 301 - -
Vra10g1097 806 SUPERFAMILY cAMP-binding domain-like 305 528 IPR018490 -
Vra10g1097 806 Gene3D Jelly Rolls 367 530 IPR014710 -
Vra10g1097 806 SMART cnmp_10 378 525 IPR000595 -
Vra10g1097 806 Gene3D Helix hairpin bin 302 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1097 Vra-Chr10 16700100 16704489 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1097 1 796 Ion Channels AT5G46240 56.156 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1097 K21867 - gmx:100811356 1317.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1097 10 16700100 16704489 Vra10g1097 10 16700100 16704489 ECH