Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1090 ATGGTTACGTTCAGGTTTCATCAGTACCAGGTCGTTGGGAGGGCTCTCCCAACGGAAGCAGATCAGCACCCTAAGATTTACCGCATGAAGCTTTGGGCTACCAACGAGGTTCGCGCAAAATCTAAGTTCTGGTATTTTTTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGTCAAATGCTCGCTATCAATGAGATTTTTGAGAAGAACCCTACAAAAATTAAGAACTATGGGATATGGTTGAGGTACCAGAGTAGGACCGGTTACCACAACATGTATAAGGAGTACCGTGATACCACTCTAAATGGTGCAGTTGAGCAGATGTACAATGAGATGGCTTCTCGTCACAGGGTCAGGTGCCCTTGCATCCAAATCATTAAGACTGCCACCATCCCAGCCAAGCTTTGCAAGAGGGAGAGCACCAAACAATTCCACAACTCCAAAATCAAGTTCCCGTTGGTCTTCAAGAAAGTTAGGCCACCATCTAGGAAGCTGAAGACCACATACAAGGCCAAGAAGCCCAACTTGTTTATGTAA 537 0.4562 MVTFRFHQYQVVGRALPTEADQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRCPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKAKKPNLFM* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1090 178 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 128 IPR023573 GO:0003735|GO:0005840|GO:0006412
Vra10g1090 178 Gene3D - 1 70 - -
Vra10g1090 178 SUPERFAMILY RplX-like 71 146 - -
Vra10g1090 178 PIRSF Ribosomal_L18a 1 178 IPR021138 GO:0003735|GO:0005840|GO:0006412
Vra10g1090 178 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
Vra10g1090 178 Gene3D - 71 144 - -
Vra10g1090 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 138 178 - -
Vra10g1090 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 137 - -
Vra10g1090 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 138 178 IPR028877 -
Vra10g1090 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 137 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1090 Vra-Chr10 16628541 16630482 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1090 1 178 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 92.697 4.02e-124 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1090 K02882 - jre:108990266 364.385