Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1089 ATGGAGCAGTACGGCCGGTCCAGTGAAGGTTCGCGGTCTGATCCGTCCCCGGAATGGGCCGGGCCCGGAGCCCAAACCGGTCTTGAAGAGCCTATGTGGCAATTGGGGCTGGGTGCTGCGGAGGAATCGTATCCGCAACGCCCCGATGAGGCTGATTGCACTTACTACTTGAGGACCGGTTTCTGTGGCTTCGGTTCGCGGTGTCGGTACAATCACCCTCGTGACCGTGGCATGGTTGTTGGAGCTGAGAGGGCTGCGGGGGAGTATCCGGAACGAGTTGGCCAGCCTGTGTGCCAGTATTACATGAGGACAAGAACGTGCAAGTTTGGTTCGTCTTGCAAGTACCACCACCCGAGGCTAGCAGGAGGTGCTGTTACCCCTGTGTCGCTAAACTATTATGGATATCCATTGCGTCCGGGTGAAAAGGAGTGCTCGTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCGACTTGTAAATTCCATCATCCGGTTCCTGCTGGTGTCCAAATTCCAGCACCATCACCAGTTGCTCCAGTTTCACCTTTGCCTGTACCAGTGCCTTCACCGATATATTCAACCATGCAGCCGCCACCTGGTCCTTCATCACAGCAAATTGGTGTGCTGGTTGCAAGGCCTCCTCTGCTGCCTGGCTCATTAGTCCAGAGTCCCTATGGACCTGTGGTACTGTCACCTGCCATGGTACCTATTTCTGGCTGGGGTCCTTATCAAGCTTCTGGAACAGGTGCTGTACTTCCTTCCGGTACTCCTAATGTTGGTTCAGCACAGCTTTACGGGATGACACAACTGCCTTCATCAGCAGCTGCCTATCCTGGACCTTATCAACTTCCCGGTTCCTTAGTTGGTCCTTCAAGCAGTAATCAGAAGGAGCAGGCATTTCCAGAAAGGTCTAATCAACAAGATTATCAGTATTATCCGAAAACAGGGGAGGTTAAAGGTGGTCCGTCCTATAGGCATCACCCTCCACCAGAAATGACTGCACCAAAAGCAAATGTGACTCTTAGTCCTGGTGGTCTTCCTTTGCGCCCGGGGGCATCACCTTGTACACATTATGCACAACATGGAGTATGTAAGTTTGGTTCTGCATGCAAATTCGATCATTCTGTGGGATCACTGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGACATGCCTGTTGCACCCTATCCTGTGGGTTCAACAATTGGTACTCTTGCTCCATCGTCATCGTCATCAGAGTTGCGGCTGGAACTTTACTCTGGATCCAACAAAGAGTCTGTTCCATCCAGAATGTCTTCATCGTCCGGAATGTTGACAGGGTCAATAGGCTTGACTTTGTCAACTGGTGGACCCATTTCTCAGTCAAATAGTCAGCCATCTGCTCCAAGTCTGGATCCATTAGCCACTGTCACTAGTGCCACCAGTAGCAATGTCTCTCACACCTCAAGCTAA 1452 0.5131 MEQYGRSSEGSRSDPSPEWAGPGAQTGLEEPMWQLGLGAAEESYPQRPDEADCTYYLRTGFCGFGSRCRYNHPRDRGMVVGAERAAGEYPERVGQPVCQYYMRTRTCKFGSSCKYHHPRLAGGAVTPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPVPAGVQIPAPSPVAPVSPLPVPVPSPIYSTMQPPPGPSSQQIGVLVARPPLLPGSLVQSPYGPVVLSPAMVPISGWGPYQASGTGAVLPSGTPNVGSAQLYGMTQLPSSAAAYPGPYQLPGSLVGPSSSNQKEQAFPERSNQQDYQYYPKTGEVKGGPSYRHHPPPEMTAPKANVTLSPGGLPLRPGASPCTHYAQHGVCKFGSACKFDHSVGSLSYSPSASSLADMPVAPYPVGSTIGTLAPSSSSSELRLELYSGSNKESVPSRMSSSSGMLTGSIGLTLSTGGPISQSNSQPSAPSLDPLATVTSATSSNVSHTSS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1089 483 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Vra10g1089 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 375 IPR000571 GO:0046872
Vra10g1089 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Vra10g1089 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Vra10g1089 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 164 IPR000571 GO:0046872
Vra10g1089 483 MobiDBLite consensus disorder prediction 421 483 - -
Vra10g1089 483 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Vra10g1089 483 Gene3D - 45 121 - -
Vra10g1089 483 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Vra10g1089 483 SMART c3hfinal6 349 376 IPR000571 GO:0046872
Vra10g1089 483 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Vra10g1089 483 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Vra10g1089 483 SUPERFAMILY CCCH zinc finger 352 379 IPR036855 GO:0046872
Vra10g1089 483 PANTHER PROTEIN PHOSPHATASE RELATED 1 473 - -
Vra10g1089 483 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Vra10g1089 483 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872
Vra10g1089 483 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 473 - -
Vra10g1089 483 SUPERFAMILY CCCH zinc finger 95 119 IPR036855 GO:0046872
Vra10g1089 483 MobiDBLite consensus disorder prediction 1 27 - -
Vra10g1089 483 SUPERFAMILY CCCH zinc finger 140 165 IPR036855 GO:0046872
Vra10g1089 483 Gene3D - 123 171 - -
Vra10g1089 483 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1089 Vra-Chr10 16610948 16623212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1089 1 451 C2H2 Transcription Factor Family AT5G18550 55.819 2.24e-150 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra10g1089 zf-CCCH 6.7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1089 - - gmx:100812433 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1089 10 16610948 16623212 Vra10g1089 10 16610948 16623212 ECH
Vra7g2870 7 48881128 48885961 Vra10g1089 10 16610948 16623212 PCT