Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1088 ATGACATATGCAAAATCTCCTTTTCCTTCTCCCATGATGAAGTCACTGTCTTTAAAAGACTTGGCATTACTTCACCCTTTTCATTCACATTCTCTTGTTTGCTCCCTTGAGGTGACACTATTTAAATTCTCTCCCCCTCAACAGACACATATATTTCTTGCCATTTTCCAAGCCATGTCGACCTCTAGAACCTCAGATGTTTCCCTCAAAGGATATCAGTCTAAACCAACCCAAATGAATTTGTCTCTTCTTCAACGTAACGCATCAACTTCTGGTGAGAGAAGAGGGCGAGGAAAGCAAGCAGAACCTGGAAGATTTCTTGGGGTGAGAAGACGCCCTTGGGGTAGATATGCTGCTGAAATCAGAAACCCTTTAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCCGAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGATGCCAAGCAAGAACCAACTTCGTATACTCTAAAGATACCAACATTTTCCACAATACTCTCACTCCTTTAAATTCTCAACCTCTCTTGCCACCTTCACATAACACTCACAACAACATGCAACTAACCAATCAAACTACCCTATCTCACCTTGCTACTTTCGCTTCCCACATTGAAAACCCTTCTTCTGACTTATATGCTGACAGTGACACTGCTTTTGGATCACCTCAGGATGATAATTTCTTCTTTTCCACTGACTCTAACTCTGGTTACCTTGAATGCATAGTTCCAGGTAACTGTTTCAAGAAGAGCAATGCCAGTGCTTCAGGTTGTAACCTAGAGGTTGGCCACGTTAACTCAAACTCCATGCAGGTTCAGCCACATTTTGACACCACTCAAGAAGCCTTCAACATGCAAGCAACAGTAGCACCTAACTATGCAGATTTTTCTTGCTCAACTCATCTTGGTAAAGGATTATGGGATAATCATCAATCATGGGATTGCAGTTCCAATGAACTGGCAGCTATGTTTAAAAATCCATCAAGGGTTGTTGAGGAAGGGTGCATGGATCCCTTCACTGATAGCTCAAACTATGAGCTAATGACTCAGGTTGTTTCTTCAACTACATATTCTCCATCAGTGCCTCCCTTTGGGAATGTTGGCTCGGGATACTCACCCTTCTGA 1143 0.4252 MTYAKSPFPSPMMKSLSLKDLALLHPFHSHSLVCSLEVTLFKFSPPQQTHIFLAIFQAMSTSRTSDVSLKGYQSKPTQMNLSLLQRNASTSGERRGRGKQAEPGRFLGVRRRPWGRYAAEIRNPLTKERHWLGTFDTAEEAALAYDRAALSMKGCQARTNFVYSKDTNIFHNTLTPLNSQPLLPPSHNTHNNMQLTNQTTLSHLATFASHIENPSSDLYADSDTAFGSPQDDNFFFSTDSNSGYLECIVPGNCFKKSNASASGCNLEVGHVNSNSMQVQPHFDTTQEAFNMQATVAPNYADFSCSTHLGKGLWDNHQSWDCSSNELAAMFKNPSRVVEEGCMDPFTDSSNYELMTQVVSSTTYSPSVPPFGNVGSGYSPF* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1088 380 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Vra10g1088 380 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Vra10g1088 380 Gene3D AP2/ERF domain 105 163 IPR036955 GO:0003700|GO:0006355
Vra10g1088 380 CDD AP2 105 161 IPR001471 GO:0003700|GO:0006355
Vra10g1088 380 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 59 380 - -
Vra10g1088 380 Pfam AP2 domain 108 154 IPR001471 GO:0003700|GO:0006355
Vra10g1088 380 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Vra10g1088 380 SUPERFAMILY DNA-binding domain 106 163 IPR016177 GO:0003677
Vra10g1088 380 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 59 380 - -
Vra10g1088 380 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1088 Vra-Chr10 16608060 16609561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1088 59 255 AP2-EREBP Transcription Factor Family AT5G18560 45.817 2.43e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra10g1088 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1088 - - vra:106774924 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2871 7 48891233 48892901 Vra10g1088 10 16608060 16609561 PCT