Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1082 ATGGGTGGGTGTTTTCCTTGTTTTGGATCATCCAACAAGGAGGACAGTGGTGGGGTGAGGGTCAAGGAGGTGCCCAACAAGGATTCTTCTTTTAAGGAAGCTGCTTCTCTTGTTCCTCAGTCTCATCACCCCAGCAGGGCAAACACAGATAAATCGAAATCATCACGAAGTGGCGCAGATGCTAAGAAGGAAGCACCGGTTCCAAAGGATGGCCCAACAGCCCATATTGCTGCACAAACATTTACATTCCGAGAGCTTGCAGCTGCTACAAAGAATTTCAGGCCAGAATGTTTACTAGGCGAAGGGGGTTTTGGACGTGTTTACAAAGGTCGCCTCGAGAGCACAGGACAAGTAGTTGCTGTAAAACAGCTAGACCGAAATGGTCTCCAAGGAAATCGAGAATTTTTGGTGGAAGTTCTCATGCTCAGTCTCTTACATCATCCCAATCTTGTGAACTTAATTGGTTATTGTGCAGATGGTGATCAGCGGCTGCTTGTTTATGAATTTATGCCACTGGGGTCTTTGGAGGATCATTTACACGATCTTCCTCCTGACAAGGAGCCTCTGGACTGGAACACTAGGATGAAGATAGCAGCTGGAGCTGCAAAGGGATTGGAATATTTGCATGACAAGGCAAATCCGCCAGTGATATATAGAGACTTAAAATCATCCAACATCCTCCTAGACGAGGGTTACCATCCCAAGTTGTCGGATTTTGGGCTGGCAAAACTTGGTCCGGTCGGCGACAAGACTCATGTATCGACACGTGTAATGGGAACATACGGCTACTGTGCCCCAGAATATGCCATGACCGGTCAACTAACTCTGAAATCTGATGTCTACAGTTTTGGAGTTGTGTTCCTTGAACTTATTACTGGGCGCAAGGCTATTGACAATACACGTGCACATGGAGAGCACAATCTTGTTGCATGGGCACGGCCTCTCTTCAAGGACCGTCGGAAATTCCCGAAAATGGCTGACCCTCTACTTCAAGGCCGATACCCGATGCGAGGACTGTATCAAGCACTTGCAGTTGCTGCAATGTGTCTGCAGGAGCAAGCTGCTACAAGGCCTCTGATTGGGGATGTGGTGACTGCTCTCACATATCTGGCCTCACAAACATATGATCCAAATGCAGCCAACCAATCCAACAGGGTTGGCCCCTCAACTCCTAGGATGAGGGACGACAGAAGGAGCCTGGCCGACGGCGTGGACAGCCCTGACCGGCGCCTCGGCTCCCCTTCCACGCACCGAAACTCCCCAGACTTCAGGAAGAGAGACAGCAGGGATGCAAGCATGGGGACCGAGTTAGGCAGCAGGATGGACACGGGTGGTGGCTCAGGGAGGAAATGGGGATTGGATGATTATGAAAGGCAGGAGTCTCAGAGAGACAGCCCTGTAAGCACTGGAAGAGCCAGAGAGACTCCATGGAACCGGGACCTGGACCGAGAGCGTGCGGTGGCCGAAGCAAAAGTCTGGGGTGAGAATTGGAGAGAGAAGAAGAAAGCAAATGCCATGGGTAGCTTCGATGCTACAAATGAGTGA 1545 0.5036 MGGCFPCFGSSNKEDSGGVRVKEVPNKDSSFKEAASLVPQSHHPSRANTDKSKSSRSGADAKKEAPVPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAANQSNRVGPSTPRMRDDRRSLADGVDSPDRRLGSPSTHRNSPDFRKRDSRDASMGTELGSRMDTGGGSGRKWGLDDYERQESQRDSPVSTGRARETPWNRDLDRERAVAEAKVWGENWREKKKANAMGSFDATNE* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1082 514 SUPERFAMILY Protein kinase-like (PK-like) 75 367 IPR011009 -
Vra10g1082 514 MobiDBLite consensus disorder prediction 46 69 - -
Vra10g1082 514 Gene3D Phosphorylase Kinase; domain 1 66 169 - -
Vra10g1082 514 SMART serkin_6 93 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1082 514 MobiDBLite consensus disorder prediction 390 405 - -
Vra10g1082 514 CDD STKc_IRAK 99 368 - -
Vra10g1082 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Vra10g1082 514 MobiDBLite consensus disorder prediction 377 485 - -
Vra10g1082 514 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Vra10g1082 514 PANTHER OS07G0668900 PROTEIN 1 508 - -
Vra10g1082 514 ProSiteProfiles Protein kinase domain profile. 93 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1082 514 MobiDBLite consensus disorder prediction 1 74 - -
Vra10g1082 514 MobiDBLite consensus disorder prediction 419 433 - -
Vra10g1082 514 Pfam Protein kinase domain 98 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1082 514 Gene3D Transferase(Phosphotransferase) domain 1 170 387 - -
Vra10g1082 514 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 1 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1082 Vra-Chr10 16536279 16542675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1082 4 372 Glycoside Hydrolase AT3G07070 64.960 7.08e-172 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vra10g1082 Pkinase 5.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1082 - - gmx:100814575 993.416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1082 10 16536279 16542675 Vra10g1082 10 16536279 16542675 ECH