Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1081 ATGGCGAGACCTTCCAAGCCCCATTCATCTTCGGACGAAGCACTCTCCAATGCTTCGAGTTCATCCGAGGAAAAGGAGCTGGTCAACGAGCAGATCAACGAAGAGGAAGATGAGGAGGAGCTAGAGGCGGTGGCCCGCTCTGCCAGTTCCGACGATGATGACGACGAAGGTGCCGCTGGCAATCCTCCGGATTCTGACGAAGATCCAGCTGGGGATGATGACCAGGATGAGGATAATGTTGATCCGGCAATTAGCAAGCGAGAGAAGACTAGATTAAAGGAAATGCAGAAAATGAAGAAACAGAAAATCCAGGAGATACTGGATGCACAAAATGCGGCCATAGATGCTGACATGAATAATAGAGGAAAGGGGCGTCTGAAGTATCTCTTGCAGCAGACTGAGCTGTTTGCTCATTTTGCAAAAGGTGATCAAAGTTCTTCTCAAAAGTCAAGGGGAAGGGGTCGCCATGCATCGAAAGTCACCGAGGAAGAGGAAGATGAAGAATACCTTAAAGAAGAAGAAGATGGTGTAGCCAGCACACGTCTGGTGACGCAACCATCATGCATCCAAGGGAAGATGAGAGATTACCAACTGGCTGGACTAAACTGGCTCATACGATTGTATGAGAATGGGATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACCATATCTTTGTTGGGTTATTTGCACGAGTTCAGAGGAATAAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGTCCTGTTCTACGTGCAATTAAGTTTCTTGGCAACCCTGATGAAAGGAGACATATAAAAGAGGAACTTCTGGTTGCTGGCAAGTTTGATGTCTGTGTTACCAGTTTTGAAATGGCAATCAAGGAGAAGTCTGTGTTGCGACGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAAAATTCCTTGCTGTCAAAAACGATGAGACTGTACAGTACAAACTATCGCCTTCTTATAACTGGCACACCACTTCAGAATAATCTTCACGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTTAGGCCATTTCTTCTTCGAAGGTTGAAATCAGACGTTGAGAAAGGGCTGCCACCGAAAAAGGAAACTATTCTTAAAGTAGGCATGTCCCAGATGCAGAAACAGTATTATAGAGCATTACTTCAGAAGGATCTTGAAGTTGTAAATGCTGGTGGTGAAAGGAAACGCCTCCTTAACATAGCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTACACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGACAAGTTACTTCCTAAATTGAAAGAGCGTGATTCTAGGGTCCTTATATTTTCTCAGATGACGAGGCTTCTAGACATTCTTGAAGATTATTTAATGTTTCGTGGATATCAATATTGTCGCATTGATGGAAATACTGGTGGGGATGATCGAGATGCTTCCATTGATGCTTTCAACAAACCAGGAAGTGAGAAATTTGTATTCCTGTTATCTACTCGTGCTGGAGGTCTTGGAATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGACAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAGGAAGTTCAAGTCTTTCGCTTTTGTACTGAGTATACAATTGAAGAAAAGGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTTTGGTGATTCAGCAAGGGAGATTAGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGACGCCATCAAGTTTAAGATGGATGACACTGCGGAGCTATATGATTTTGATGATGAGAAGGACGAGAACAGATTTGATATTAAAAAAATTGTTAGTGAGAACTGGATTGAACCACCGAAAAGGGAGCGGAAGCGAAACTACTCAGAGTCTGAGTACTTTAAGCAAACAATGCGTCAAGGTGGTCCTACTAAACCAAAAGAGCCTCGTATTCCTAGGATGCCCCAGTTGCATGATTTTCAGTTTTTCAACACGCAGAGGTTGAGTGAGCTGTACGAAAAGGAAGTTCGCTATCTCATGCAAGCACACCAGAAGAATCAGATAAAGGACTCAATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCGTTGACTGCTGAAGAGTTGGAGGAAAAGGAGCGCTTGCTAGAAGAGGGATTTTCATCCTGGAGCCGGAGGGATTTTAATACTTTCATTAGGGCCTGCGAAAAATATGGCAGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCGAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAAAAGTTGGACCGGTACAAGAATCCTTGGCTAGAGTTAAAGATACAATATGGGCAAAACAAAGGGAAGTTGTACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAATTGGGATGAGCTAAAGGCGGCATTTCGAACTTCACCCTTGTTTCGATTTGATTGGTTTGTTAAGTCTCGCACAACTCAGGAATTGGCAAGAAGGTGTGACACCCTCATTCGTCTAGTAGAAAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCTAAAAACATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGATAGTCCATCTTTGAAGAAGCGGAAGCAGTTAACAATGGATGATTACGCAAGCACGGGGAAGAGAAGAAAATAA 3204 0.4207 MARPSKPHSSSDEALSNASSSSEEKELVNEQINEEEDEEELEAVARSASSDDDDDEGAAGNPPDSDEDPAGDDDQDEDNVDPAISKREKTRLKEMQKMKKQKIQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKSRGRGRHASKVTEEEEDEEYLKEEEDGVASTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIKEELLVAGKFDVCVTSFEMAIKEKSVLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENRFDIKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQAHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKNMTPSKRALARQTDSPSLKKRKQLTMDDYASTGKRRK* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1081 1067 PANTHER SNF2/RAD54 HELICASE FAMILY 9 1067 - -
Vra10g1081 1067 Gene3D iswi atpase 899 931 - -
Vra10g1081 1067 SMART sant 946 1007 IPR001005 -
Vra10g1081 1067 SMART sant 844 893 IPR001005 -
Vra10g1081 1067 SMART ultradead3 189 381 IPR014001 -
Vra10g1081 1067 SUPERFAMILY Homeodomain-like 847 897 IPR009057 -
Vra10g1081 1067 Gene3D ISWI, HAND domain 745 843 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vra10g1081 1067 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 1067 - -
Vra10g1081 1067 MobiDBLite consensus disorder prediction 1 97 - -
Vra10g1081 1067 MobiDBLite consensus disorder prediction 1043 1067 - -
Vra10g1081 1067 MobiDBLite consensus disorder prediction 9 26 - -
Vra10g1081 1067 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 498 649 IPR001650 -
Vra10g1081 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 691 IPR027417 -
Vra10g1081 1067 Gene3D - 414 706 IPR027417 -
Vra10g1081 1067 MobiDBLite consensus disorder prediction 1016 1067 - -
Vra10g1081 1067 MobiDBLite consensus disorder prediction 80 97 - -
Vra10g1081 1067 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 756 846 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vra10g1081 1067 Gene3D - 844 898 - -
Vra10g1081 1067 MobiDBLite consensus disorder prediction 1016 1032 - -
Vra10g1081 1067 MobiDBLite consensus disorder prediction 140 173 - -
Vra10g1081 1067 Pfam HAND 757 839 IPR015194 GO:0003677|GO:0006338|GO:0031491
Vra10g1081 1067 Pfam Helicase conserved C-terminal domain 496 608 IPR001650 -
Vra10g1081 1067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 370 IPR014001 -
Vra10g1081 1067 Coils Coil 1001 1032 - -
Vra10g1081 1067 Coils Coil 92 112 - -
Vra10g1081 1067 Pfam SNF2-related domain 206 473 IPR000330 GO:0005524|GO:0140658
Vra10g1081 1067 CDD DEXHc_SMARCA1_SMARCA5 190 410 IPR044754 GO:0005524
Vra10g1081 1067 MobiDBLite consensus disorder prediction 54 79 - -
Vra10g1081 1067 Coils Coil 18 42 - -
Vra10g1081 1067 CDD SF2_C_SNF 494 619 - -
Vra10g1081 1067 SUPERFAMILY Homeodomain-like 899 1021 IPR009057 -
Vra10g1081 1067 Pfam SLIDE 901 1011 IPR015195 GO:0003677|GO:0005634|GO:0006338
Vra10g1081 1067 Gene3D - 194 409 IPR038718 -
Vra10g1081 1067 Gene3D - 932 1035 - -
Vra10g1081 1067 ProSiteProfiles SANT domain profile. 843 895 IPR017884 -
Vra10g1081 1067 CDD SANT 847 891 IPR001005 -
Vra10g1081 1067 SMART helicmild6 524 608 IPR001650 -
Vra10g1081 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 408 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1081 Vra-Chr10 16523742 16535048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1081 214 635 RAD5 or RAD16-like Gene Family AT1G02670 27.129 3.31e-41 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra10g1081 SNF2_N 6.1e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1081 K11654 - gmx:100782649 1942.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1081 10 16523742 16535048 Vra10g1081 10 16523742 16535048 ECH
Vra7g2878 7 48942779 48951675 Vra10g1081 10 16523742 16535048 PCT