Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1079 ATGGAACGTTCTGTCATCGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAACATTACAGAAGAAGATGCAGGATTCGAGCTCCATGTTGCAATGAGCTCTACTCTTGCCGTCATTGTCATAACGAGGCAACGAGCATGCTGAGCAAACCTCTTGATCGTCACGAACTCGTTCGCCAGGATGTTGAACATGTTGTTTGTTCAGTTTGTGATACAGAGCAGCCAGTTGCCCAAGTTTGTACAAACTGCGGTGTCAGAATGGGAGAATATTTTTGCAGCATCTGCAAATTCTTCGATGATGAGACCGGGAAAGAACATTTTCATTGTGATGATTGTGGGATATGCAGAGTGGGTGGTCGTGAGAATTTTTTCCACTGCAAGAAGTGTGGGTCTTGCTATTCAAATGGTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGAGGCATCATTGTCCCATTTGCTATGAGTACCTTTTTGACTCATTGAAAGACACTGCTGTTATGAAATGTGGTCACACGATGCATTCTGAATGTTACCACGAGATGATAAAGCGCGACCAGTATTGCTGTCCCATATGCTCCAAGTCGGTAATTGACATGTCTAGGACATGGAAGAGAATTGACGAAGAGATTGAAGCAACTGTCATGCCTGAGGACTATCAGAACAGAAAGGTTTGGATACTCTGCAATGACTGCAATGACACAACTGAAGTTTACTTCCACATTATTGGGCATAAATGTGGTCACTGCAACTCATACAATACTCGTGCAATAGCTCCTCCTGTTCTACCTCAGTGA 804 0.4378 MERSVIERLDFGKMGYGCKHYRRRCRIRAPCCNELYSCRHCHNEATSMLSKPLDRHELVRQDVEHVVCSVCDTEQPVAQVCTNCGVRMGEYFCSICKFFDDETGKEHFHCDDCGICRVGGRENFFHCKKCGSCYSNGLRDNHLCVENSMRHHCPICYEYLFDSLKDTAVMKCGHTMHSECYHEMIKRDQYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYQNRKVWILCNDCNDTTEVYFHIIGHKCGHCNSYNTRAIAPPVLPQ* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1079 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 267 - -
Vra10g1079 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Vra10g1079 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Vra10g1079 267 SUPERFAMILY RING/U-box 152 202 - -
Vra10g1079 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Vra10g1079 267 Pfam Zinc finger, C3HC4 type (RING finger) 153 195 IPR018957 GO:0046872
Vra10g1079 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 1 267 - -
Vra10g1079 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 226 IPR013083 -
Vra10g1079 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Vra10g1079 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Vra10g1079 267 SMART ring_2 153 195 IPR001841 -
Vra10g1079 267 Gene3D - 227 262 - -
Vra10g1079 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Vra10g1079 267 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1079 Vra-Chr10 16506309 16509507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1079 10 266 C2H2 Transcription Factor Family AT3G18290 41.603 9.81e-58 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1079 K10144 - gmx:100812246 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2880 7 48955593 48959275 Vra10g1079 10 16506309 16509507 PCT