Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1073 ATGGGGTGTGCGTTTGGGAGAGAGTCTTCGAGGGAGGAGAGGAGAGAGGAAGTGAGAGAGGCAAAAGCTGAGGTGAGTAGAGCAGAGGTTGTTGAGAATGAGAACATTGAGAAGGAGAAGGAGAAGGAGGGTGAAAGAGAGGAGAAGAGGACAAGGGCAAGGGGAGAGAGGAGGCGATCTTCGAAGCCGAAGCCGAATCCGAGGTTGAGCAACCTACCTAACCATGTTCACGGTGAGCAGGTTGCAGCAGGGTGGCCCTCCTGGCTCTCTAAGGTTGCTGGTGAAGCCATCAACGGATTGACGCCTCGGAAAGCTGACACCTTTGAGAAGCTTGATAAGATCGGGCAAGGTACATACAGCAATGTTTACAAAGCTAGGGATTCTTTGACGGGAAAAATTGTTGCTCTAAAGAAGGTCCGTTTTGACAATTTAGAGCCTGAAAGTGTGAAGTTCATGGCTAGAGAGATTTTGATTCTCCGTCGTCTAGATCATCCCAATGTCATCAAACTTGAAGGCTTAGTGACTTCTAGAATGTCGTGCAGTTTATATCTTGTATTTGAATACATGGTGCATGATCTGGCTGGACTGGCCACAAACCCGGCAATTAAGTTCACGGAATCTCAGGTAAAATGTTACATGCATCAGCTATTTTCTGGACTGGAGCACTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGGTCAAACCTTCTTATTGATAATGATGGAAATCTTAGGATTGCTGATTTTGGATTAGCTTCCTTCTTCGATCCTCATCACAAGCACCCTATGACTAGTAGAGTGGTTACATTATGGTATCGACCTCCAGAACTTCTTCTTGGGGCCACTGAATATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTATTGGCTGGAAAGCCTATTATGCCTGGTCGAACGGAGGTGGAACAACTGCACAAGATATTTAAGCTATGTGGTTCTCCTTCTGACGAATATTGGAAGAAATCGAAGTTGCCTCATGCTACCATTTTTAAGCCCCAACAGTCATACAAGCGGTGTATTGCAGAGACGTTCAAAGATTTTCCTCCATCATCCCTGCCGCTTATTGACACCCTTCTCTCAATTGATCCGGATGAACGTTTGACTGCCACTGCTGCGTTGCATAGTGAATTCTTTACAACAAAACCATATGCCTGTGATCCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGAAGATTGAGAGCAGCCGGTAAAGCTAATGTTGACGGTGTCAAGAAATCTCGTCCACGAGAGCGAGCTGGGCGAGGAATTCCAGTTCCAGAGGCCAATGCTGAACTGCAAGCAAATATTGATAGACGGCGGCTGATCACACATGCAAATGCTAAGAGCAAGAGTGAGAAATTTCCTCCTCCTCACCAAGATGGAGCTCTAGGCTATCCACTGGGTTCTTCACATCACATGGATCCAGTTTTTGATCCTCCTGATGTTCCATTTAGTTCCACAAACTTCTCACAACCTAAAACAAACATCCAAACCTGGTCAGGCCCATTGGTAGATCCTTCTAATGGGGGCGCACCAAGGAGAAAGAAGAAACATGGAAAATGA 1641 0.4637 MGCAFGRESSREERREEVREAKAEVSRAEVVENENIEKEKEKEGEREEKRTRARGERRRSSKPKPNPRLSNLPNHVHGEQVAAGWPSWLSKVAGEAINGLTPRKADTFEKLDKIGQGTYSNVYKARDSLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMVHDLAGLATNPAIKFTESQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGNLRIADFGLASFFDPHHKHPMTSRVVTLWYRPPELLLGATEYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATIFKPQQSYKRCIAETFKDFPPSSLPLIDTLLSIDPDERLTATAALHSEFFTTKPYACDPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANVDGVKKSRPRERAGRGIPVPEANAELQANIDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHMDPVFDPPDVPFSSTNFSQPKTNIQTWSGPLVDPSNGGAPRRKKKHGK* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1073 546 SMART serkin_6 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1073 546 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Vra10g1073 546 Pfam Protein kinase domain 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1073 546 PANTHER CYCLIN-DEPENDENT KINASE 1 546 - -
Vra10g1073 546 SUPERFAMILY Protein kinase-like (PK-like) 103 398 IPR011009 -
Vra10g1073 546 CDD STKc_CDK9_like 108 392 - -
Vra10g1073 546 MobiDBLite consensus disorder prediction 1 75 - -
Vra10g1073 546 Coils Coil 11 48 - -
Vra10g1073 546 MobiDBLite consensus disorder prediction 427 546 - -
Vra10g1073 546 MobiDBLite consensus disorder prediction 7 54 - -
Vra10g1073 546 Gene3D Transferase(Phosphotransferase) domain 1 191 431 - -
Vra10g1073 546 MobiDBLite consensus disorder prediction 459 481 - -
Vra10g1073 546 PANTHER CELL DIVISION PROTEIN KINASE 1 546 - -
Vra10g1073 546 Gene3D Phosphorylase Kinase; domain 1 96 190 - -
Vra10g1073 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Vra10g1073 546 MobiDBLite consensus disorder prediction 509 530 - -
Vra10g1073 546 MobiDBLite consensus disorder prediction 427 447 - -
Vra10g1073 546 ProSiteProfiles Protein kinase domain profile. 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1073 Vra-Chr10 16482507 16488084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1073 103 430 Core Cell Cycle Gene Families AT5G10270 51.453 5.38e-116 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vra10g1073 Pkinase 1.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1073 K08819 - gmx:100779413 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1073 10 16482507 16488084 Vra10g1073 10 16482507 16488084 ECH
Vra7g2886 7 48993685 48997366 Vra10g1073 10 16482507 16488084 PCT