Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1071 ATGGGCATAATCAGAAGCATGAGATCGCGGTCGCATCGCGTCGTGCAGGAGCAAGAAGAGTGTGTTGGTGACAGCATGAGACAGAGTTGTTGGGCCAACATGCCCCAAGAGCTTCTCCGGGAGGTTCTCCTACGAATCGAGGCCTCCGAGGACACGTGGCCGCCGCGGAAGAGTGTCGTCGCCTGCGCCGGCGTTTGCCGCAGCTGGAGACAAATCACCAAAGACATTGTCAAAACACCCGAGCTTTCCTCAAAAATCACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTGCTCCGGTGCTTTATAAAGCGCAACCGGTCAACCCAAACATACTATTTGTTTCTCAGTTTAACCACTACACTAGCCGAAGATGGGAAGTTCCTTCTGGCTGCACGCAAGTGCAGACGTCCGACATGCACAGATTATATCATCTCTCTTGATGCAGACGATATGTCAAAGGGAAGCAACTCCTATGTTGGGAAACTAAGATCAAATTTTCTTGGAACAAAGTTCACAATCTATGACAGCCAGCCACCTCACTCAGGGGCAAGGATTATGAAAAGTCGCTCCACAAGGCTGGTGAATCTAAAACAAGTTTCGCCAAAGGTCCCTACAGGCAATTATCCAGTGGCTCACATCTCATATGAATTGAATGTGCTAGGCTCCCGCAGGGGGCCTAGGAGAATGCATTGTGTTATGGATTCCATTCCTGCCACTGCAATTGAAGCTGGAGGAGTAGCTCCTACACAGACTGAGTTTTCTCTTAACAACATAGATATGTTTCCTTCATTCCCTTTTTTCCGATCAAAATCAAATCGTGTAGAAAACACAATGTCTGGACCCCTGGTTGATCAAAAGGATGGGATGCTCGTGTTAAAAAACAAGTCTCCTAGGTGGCACGAGCAGCTCCAGTGTTGGTGCTTAAACTTTCATGGCCGGGTGACAATTGCCTCGGTTAAAAACTTTCAGCTAGTAGCTTCTGCGGAAAATGGACCTGCTGGACCAGAGCATGATAAGATTATCCTCCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGATACCCTATTTCGGCTTTCCAGGCCTTTGCGNTGTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 1155 0.4771 MGIIRSMRSRSHRVVQEQEECVGDSMRQSCWANMPQELLREVLLRIEASEDTWPPRKSVVACAGVCRSWRQITKDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSTQTYYLFLSLTTTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDSQPPHSGARIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRRGPRRMHCVMDSIPATAIEAGGVAPTQTEFSLNNIDMFPSFPFFRSKSNRVENTMSGPLVDQKDGMLVLKNKSPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAXCLSSFDTKIACE* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1071 384 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 3 384 - -
Vra10g1071 384 PANTHER TUBBY-RELATED 3 384 - -
Vra10g1071 384 Gene3D Tubby Protein; Chain A 88 384 IPR025659 -
Vra10g1071 384 PRINTS Tubby superfamily signature 146 162 IPR000007 -
Vra10g1071 384 PRINTS Tubby superfamily signature 162 186 IPR000007 -
Vra10g1071 384 PRINTS Tubby superfamily signature 211 238 IPR000007 -
Vra10g1071 384 PRINTS Tubby superfamily signature 296 313 IPR000007 -
Vra10g1071 384 PRINTS Tubby superfamily signature 314 330 IPR000007 -
Vra10g1071 384 PRINTS Tubby superfamily signature 341 360 IPR000007 -
Vra10g1071 384 PRINTS Tubby superfamily signature 362 384 IPR000007 -
Vra10g1071 384 ProSitePatterns Tub family signature 1. 314 327 IPR018066 -
Vra10g1071 384 SUPERFAMILY Tubby C-terminal domain-like 80 384 IPR025659 -
Vra10g1071 384 Gene3D - 24 84 - -
Vra10g1071 384 Pfam F-box domain 31 78 IPR001810 GO:0005515
Vra10g1071 384 SUPERFAMILY F-box domain 26 75 IPR036047 GO:0005515
Vra10g1071 384 Pfam Tub family 92 379 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1071 Vra-Chr10 16467208 16472478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1071 8 384 TUB Transcription Factor Family AT2G47900 72.368 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vra10g1071 Tub 3.1e-110 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1071 K19600 - gmx:100778346 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1071 10 16467208 16472478 Vra10g1071 10 16467208 16472478 ECH
Vra7g2888 7 49004493 49007141 Vra10g1071 10 16467208 16472478 PCT