Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra10g1071 | ATGGGCATAATCAGAAGCATGAGATCGCGGTCGCATCGCGTCGTGCAGGAGCAAGAAGAGTGTGTTGGTGACAGCATGAGACAGAGTTGTTGGGCCAACATGCCCCAAGAGCTTCTCCGGGAGGTTCTCCTACGAATCGAGGCCTCCGAGGACACGTGGCCGCCGCGGAAGAGTGTCGTCGCCTGCGCCGGCGTTTGCCGCAGCTGGAGACAAATCACCAAAGACATTGTCAAAACACCCGAGCTTTCCTCAAAAATCACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTGCTCCGGTGCTTTATAAAGCGCAACCGGTCAACCCAAACATACTATTTGTTTCTCAGTTTAACCACTACACTAGCCGAAGATGGGAAGTTCCTTCTGGCTGCACGCAAGTGCAGACGTCCGACATGCACAGATTATATCATCTCTCTTGATGCAGACGATATGTCAAAGGGAAGCAACTCCTATGTTGGGAAACTAAGATCAAATTTTCTTGGAACAAAGTTCACAATCTATGACAGCCAGCCACCTCACTCAGGGGCAAGGATTATGAAAAGTCGCTCCACAAGGCTGGTGAATCTAAAACAAGTTTCGCCAAAGGTCCCTACAGGCAATTATCCAGTGGCTCACATCTCATATGAATTGAATGTGCTAGGCTCCCGCAGGGGGCCTAGGAGAATGCATTGTGTTATGGATTCCATTCCTGCCACTGCAATTGAAGCTGGAGGAGTAGCTCCTACACAGACTGAGTTTTCTCTTAACAACATAGATATGTTTCCTTCATTCCCTTTTTTCCGATCAAAATCAAATCGTGTAGAAAACACAATGTCTGGACCCCTGGTTGATCAAAAGGATGGGATGCTCGTGTTAAAAAACAAGTCTCCTAGGTGGCACGAGCAGCTCCAGTGTTGGTGCTTAAACTTTCATGGCCGGGTGACAATTGCCTCGGTTAAAAACTTTCAGCTAGTAGCTTCTGCGGAAAATGGACCTGCTGGACCAGAGCATGATAAGATTATCCTCCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGATACCCTATTTCGGCTTTCCAGGCCTTTGCGNTGTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA | 1155 | 0.4771 | MGIIRSMRSRSHRVVQEQEECVGDSMRQSCWANMPQELLREVLLRIEASEDTWPPRKSVVACAGVCRSWRQITKDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSTQTYYLFLSLTTTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDSQPPHSGARIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRRGPRRMHCVMDSIPATAIEAGGVAPTQTEFSLNNIDMFPSFPFFRSKSNRVENTMSGPLVDQKDGMLVLKNKSPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAXCLSSFDTKIACE* | 385 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra10g1071 | 384 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 9 | 3 | 384 | - | - | |
Vra10g1071 | 384 | PANTHER | TUBBY-RELATED | 3 | 384 | - | - | |
Vra10g1071 | 384 | Gene3D | Tubby Protein; Chain A | 88 | 384 | IPR025659 | - | |
Vra10g1071 | 384 | PRINTS | Tubby superfamily signature | 146 | 162 | IPR000007 | - | |
Vra10g1071 | 384 | PRINTS | Tubby superfamily signature | 162 | 186 | IPR000007 | - | |
Vra10g1071 | 384 | PRINTS | Tubby superfamily signature | 211 | 238 | IPR000007 | - | |
Vra10g1071 | 384 | PRINTS | Tubby superfamily signature | 296 | 313 | IPR000007 | - | |
Vra10g1071 | 384 | PRINTS | Tubby superfamily signature | 314 | 330 | IPR000007 | - | |
Vra10g1071 | 384 | PRINTS | Tubby superfamily signature | 341 | 360 | IPR000007 | - | |
Vra10g1071 | 384 | PRINTS | Tubby superfamily signature | 362 | 384 | IPR000007 | - | |
Vra10g1071 | 384 | ProSitePatterns | Tub family signature 1. | 314 | 327 | IPR018066 | - | |
Vra10g1071 | 384 | SUPERFAMILY | Tubby C-terminal domain-like | 80 | 384 | IPR025659 | - | |
Vra10g1071 | 384 | Gene3D | - | 24 | 84 | - | - | |
Vra10g1071 | 384 | Pfam | F-box domain | 31 | 78 | IPR001810 | GO:0005515 | |
Vra10g1071 | 384 | SUPERFAMILY | F-box domain | 26 | 75 | IPR036047 | GO:0005515 | |
Vra10g1071 | 384 | Pfam | Tub family | 92 | 379 | IPR000007 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra10g1071 | Vra-Chr10 | 16467208 | 16472478 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra10g1071 | 8 | 384 | TUB Transcription Factor Family | AT2G47900 | 72.368 | 0.0 | 563 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Vra10g1071 | Tub | 3.1e-110 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra10g1071 | K19600 | - | gmx:100778346 | 736.487 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vra10g1071 | 10 | 16467208 | 16472478 | Vra10g1071 | 10 | 16467208 | 16472478 | ECH | |
Vra7g2888 | 7 | 49004493 | 49007141 | Vra10g1071 | 10 | 16467208 | 16472478 | PCT |