Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1066 ATGAATCAGTATCACATCTACGAAGCTATCGGTCGCGGCAGATACTCTACCGTTTACAAAGGCAGGAAAAAGAAGACTATCGAGTATTTCGCCATCAAGAGCGTTGATAAATCGCAGAAAACTAAGGTTCTTGAAGAGGTCAGGATTCTTCACACGTTGGATCATATAAATGTGCTGAAGTTTTATGATTGGTATGAAACTTCTGCTCATTTATGGTTGGTTTTAGAGTATTGCGTCGGAGGGGATTTGCTCTCCATATTACGACAGGATAGTAAATTTCCAGAAGAGTCTGTTCACGATCTTGCTCTTGATTTACTGAAAGCTCTACAGTTTTTACACTCAAATGGAATAATCTATTCCGACTTGAAACCATCCAATATTCTACTTGATGAAAATGGATGCGCAAAGTTATGTGATTTTGGATTAGCGAAGAAATTGAGAGATATAACAAAAGGTTTTTCTTCTTCGTTACCCCGAGCAAAACGTGGAACACCTTCTTACATGGCTCCGGAGCTTTTTGAGGATGGTGGAGTGCATTCTTACGCTTCTGACCTCTGGGCATTAGGATGTGTCCTATATGAATGTTATGCTGGGAGACCACCCTTTGTGGGAAGGGAATTTACTCAGCTTGTAAAATCTATCATTTCAGATCCTACTCCACCACTTCCGGGTAATCCTAGCAGACCTTTTGTTAATTTAATTAATTCCCTTTTGGTAAAGGATCCAGCTGAAAGAATACAATGGCCTGAGCTTTGTGGACATGCCGTTTGGAGAACAAAAATTCCTCCGGTGCCTCTTCCTGCTCAACCTGCATTTGATGATATGGTAGAGCTACACATTAGATCTGTCTTATCAGAACATAAATCTTCGCATAACAGGACACCTCCCAAATATCGTGAAAAGGATGTCAAAGGGGTCTTGAAGAAAGACGAGAACTCTATTTTAGTATCTAGAGGCCTTGAGACACCAACAAGGGCAACACCAAATGGCCCCAGAACTCAGATAAAAGGGTCTGGTAGAACAAATGACGTAAAGCAGAAGGATCATTCTAATATTAGCAAGGGTGTGAATCTATTAAGATTGTCAAGAATAGCAAAAACAAATTTACAGAGGGAAAATGAGAAAGAAAACTATCGACGCCCTTTGCCTAATAACTCTGAGAATGATTCTGAAGTTAAAATTGAGAACACTGACATGGAACTTGATTTTAATGAGAATACTGAAGATGATACACATGAAGAAACTGATGGCAACGAACCTAGTGAGAAAATAGACCATCATTTTCTGAATCAGGGAAAAACAGAGGAGATTGAAAATACTGCACACCAGTTCGATACCCCATCTGCTGTTAGCCCTCCAGTCTCAGATGATCTTCATGAATTAACTCCTGACATTTCTGCTGTTACTCCCAGCGTGAGCCCTCAGGTGAAGAAGCATAGAGCTAAAGAAGACTCAGGATCTGCCCTTGACTCTGATTCTTCAAGGTTGTCTAGCAACCTTTCCCAGGTTCTTTGGCATCCATCTGATCTCTCAGTCAGACCTGTAATGCCTAGCAGAAAAGTTGATAAAGTCTCAGAAGTCATTCCTTCACTCCCTTTTGAGGCATTGCAAGCGTCTGATTTTGTTAAGATGCCTAAAGAGCAATTGGAGGCAGTCCACAACCGGATATTAGCCATTTTGAACGGAAATACCAGCATTGGAGAGAAACAGAATGTGATTAGGTACCTCGAGATGTTGAGCATTAATGCTGATGCAGCTAATGTCTTGACCAATGGGCCAATTATGCTCATGCTTGTAAAATTGCTTCGTCAATCCAAGGCATCAGCTTTGCGTGTTCAACTTGCTTCATTGATTGGTCTGTTGATTAGGCACTCCACTTTTGTTGATGACAGTTTGTCTAATTCTGGAATTTTAGGTGCACTGACTGATGGCCTTAGAGACAGGCAGGAAAAAGTTAGGAGGTTTTCCATGGCTGCTTTGGGTGAGTTGCTATTTTATATATCCACTCAAAATGCAGACTGCAAGGATAACAATCAACTTGAATCTCCTTCAAAGGACAATAGGACAACATGTGGCTGGCAGGTTCCAAATTCGTTAATTTCGCTTGTGTCTTCAATGTTGAGGAAGGGCGAGGATGATATAACTCAATTGTATGCATTGAGAACGATTGAGAATATTTGCAGTCAAGGAGGGTTCTGGGTGGGGAGATTGGCCAGTCAAGATGTTTTTAGTAATCTCTGTTATATCTATAGGGCGGCAGGGAAACAAGAGAGTGTGAGGCTCACTGCAGGATCATGCTTGGTGCGCCTTGTTCGTTTTAATCCGCCTAGCATTCAGTCTGTTATTGAGAAACTCTCATTCAAGGATCTAGCTTCTACTCTTGTAAAGGGAAGTCCACGAGAGCAGCAAATCAGCTTAAATCTTCTTAACATAGCAATGCTCGGGAGTCACTTGTTCACAAATATTGGAAGATACCTTGTACAACTTGCCGAGGATAAAAATCTAATCCCAAGTCTTTTGGCTCTTGTTGAGCAAGGTAGTGAAGTTTTAAGAGGAAAGGCACTAGTTCTTGTGGCTCTCCTCTGTAAGCATGGCAGGAGGTGGCTTCCACACTTCTTCTGTAGTCAAAAGTTGCTTTCTGTTGTGGACAGGCTGGGAAAAGAGAAAGATGCCTATGTGAGGCAGTGTTTGGATGCATTTGTGCATATTGTGGCATCCAGTATTCCAGGTTTATTGGATATAATAACAGGGGATGTCCAGCAAATGATGGGAGGAAGGCGCCATGGACACATCTCTGCCCTTACCAGCAGATCTCCAAAAGCCAACATTCATTTGTTTCCTGTTGTCCTTCATCTTCTTGGAACTTCAACTTTTAAGCACAAAGTCGTGACACCACAAGTAGTACTTCAGTTGGCGAATCTAATTAAACTTGTAGAGACACCATTTCAGGGAAGAGATGACTTCCAAATAACCCTTCTTCGAATTTTCGAGTCTCTCACAGAGGAATCTCCTATGATTCTTGGCAATGCTGACATTTTCATACGTGAAATCCTCCCTAGTTTGACTGTTCTCTACAAGGGTAACAAGGATGGTGATGCCAGGTTTTTGTGCCTTAAAATTCTTTTTGATGTGATGATCATTCTTTTGAGTGAACCAATTGAAGAAGAGCAACGATTAAAGGATCTTAAATTCATATCAAATACCCGCTTTCTTCCTCTCTACCCAACCTTGATTGAAGATGAAGACCCTATTCCTATTTATGCCCAGAAACTTCTTGTTATGCTACTGGAGTTCAGTTTTATTACAATTCCAGACATTCTACATATGAAGGCAATTTCACAATGCTTCGAGTTTTTGCTTGGTGATCTCTCAAATGCAAATGTGAATAATGTTAAACTGTGTCTTGCTCTAGCTTCTGCTCCCGAGATGGAGTCGAAATTACTCTCTCATTTAAAGGTGGTTAGGAGGATTGGCAACTTTCTTGAGTTTGTACATGCAAAGGGCATGGAAGATTTGCTGGAACCCACTCTTGGGCTGTGTAGGGCTTTTATAGCACGTTCAGTCGGCTGTGCAAAAGGCTTGAGCAGCACAAGAGAACCAAATCTCTTAGGTGACTATCCTCCCGAGTTGAGTGGTGGTGCTGTTGATCCCCAGCAATGCATAAAAGATATCGCAGACTTTGGAAGCAATTTTGGTGTCTTGCTAGAGTTGAGTGCCTCTGCAGAAACCAGTATTGCCGATGTAGCTTCTGAATGTGTTGTTTTACTGTTCAAGGCAGCTCCTAGAGAAGCCACCACTGGTATACTAACTAATCTTCCCAAGGTCACTGTGATCCTAGAGAGCTGGAATAGAGGCATTCCTCACTTGATGGTGCAGCGAATGCTTCATTCTTTAGGTTATGCTTGCAAGCAATACTTACTGCATGCAATGATATTGTCAATATCTAAATCAGAGATTTCAAGAATTGAAGTTGTAGTTTCTGAAATCAAAAGTTCAGGTGTACTACTCTTAGCCAAAACTGCTGGGCTAGCAGCCTTGGAGTTGCAGCGGTTGCCTCGCTGCATTTGA 4068 0.4164 MNQYHIYEAIGRGRYSTVYKGRKKKTIEYFAIKSVDKSQKTKVLEEVRILHTLDHINVLKFYDWYETSAHLWLVLEYCVGGDLLSILRQDSKFPEESVHDLALDLLKALQFLHSNGIIYSDLKPSNILLDENGCAKLCDFGLAKKLRDITKGFSSSLPRAKRGTPSYMAPELFEDGGVHSYASDLWALGCVLYECYAGRPPFVGREFTQLVKSIISDPTPPLPGNPSRPFVNLINSLLVKDPAERIQWPELCGHAVWRTKIPPVPLPAQPAFDDMVELHIRSVLSEHKSSHNRTPPKYREKDVKGVLKKDENSILVSRGLETPTRATPNGPRTQIKGSGRTNDVKQKDHSNISKGVNLLRLSRIAKTNLQRENEKENYRRPLPNNSENDSEVKIENTDMELDFNENTEDDTHEETDGNEPSEKIDHHFLNQGKTEEIENTAHQFDTPSAVSPPVSDDLHELTPDISAVTPSVSPQVKKHRAKEDSGSALDSDSSRLSSNLSQVLWHPSDLSVRPVMPSRKVDKVSEVIPSLPFEALQASDFVKMPKEQLEAVHNRILAILNGNTSIGEKQNVIRYLEMLSINADAANVLTNGPIMLMLVKLLRQSKASALRVQLASLIGLLIRHSTFVDDSLSNSGILGALTDGLRDRQEKVRRFSMAALGELLFYISTQNADCKDNNQLESPSKDNRTTCGWQVPNSLISLVSSMLRKGEDDITQLYALRTIENICSQGGFWVGRLASQDVFSNLCYIYRAAGKQESVRLTAGSCLVRLVRFNPPSIQSVIEKLSFKDLASTLVKGSPREQQISLNLLNIAMLGSHLFTNIGRYLVQLAEDKNLIPSLLALVEQGSEVLRGKALVLVALLCKHGRRWLPHFFCSQKLLSVVDRLGKEKDAYVRQCLDAFVHIVASSIPGLLDIITGDVQQMMGGRRHGHISALTSRSPKANIHLFPVVLHLLGTSTFKHKVVTPQVVLQLANLIKLVETPFQGRDDFQITLLRIFESLTEESPMILGNADIFIREILPSLTVLYKGNKDGDARFLCLKILFDVMIILLSEPIEEEQRLKDLKFISNTRFLPLYPTLIEDEDPIPIYAQKLLVMLLEFSFITIPDILHMKAISQCFEFLLGDLSNANVNNVKLCLALASAPEMESKLLSHLKVVRRIGNFLEFVHAKGMEDLLEPTLGLCRAFIARSVGCAKGLSSTREPNLLGDYPPELSGGAVDPQQCIKDIADFGSNFGVLLELSASAETSIADVASECVVLLFKAAPREATTGILTNLPKVTVILESWNRGIPHLMVQRMLHSLGYACKQYLLHAMILSISKSEISRIEVVVSEIKSSGVLLLAKTAGLAALELQRLPRCI* 1356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1066 1355 MobiDBLite consensus disorder prediction 466 494 - -
Vra10g1066 1355 CDD STKc_ULK4 3 257 - -
Vra10g1066 1355 MobiDBLite consensus disorder prediction 367 382 - -
Vra10g1066 1355 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1352 IPR044591 GO:0000911|GO:0000914|GO:0008017
Vra10g1066 1355 Gene3D - 541 902 IPR011989 -
Vra10g1066 1355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Vra10g1066 1355 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vra10g1066 1355 MobiDBLite consensus disorder prediction 401 415 - -
Vra10g1066 1355 SUPERFAMILY Protein kinase-like (PK-like) 1 292 IPR011009 -
Vra10g1066 1355 ProSiteProfiles Protein kinase domain profile. 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1066 1355 MobiDBLite consensus disorder prediction 317 340 - -
Vra10g1066 1355 SMART serkin_6 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1066 1355 MobiDBLite consensus disorder prediction 314 355 - -
Vra10g1066 1355 Pfam Protein kinase domain 4 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1066 1355 SUPERFAMILY ARM repeat 552 902 IPR016024 -
Vra10g1066 1355 MobiDBLite consensus disorder prediction 367 424 - -
Vra10g1066 1355 Gene3D Transferase(Phosphotransferase) domain 1 1 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1066 Vra-Chr10 16418983 16425729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1066 2 258 MAP Kinase Kinase Kinase AT3G13530 32.197 7.66e-36 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Vra10g1066 Pkinase 1.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1066 K17545 - gmx:100817590 2377.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1066 10 16418983 16425729 Vra10g1066 10 16418983 16425729 ECH