Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1065 ATGGAGTGCAATAAAGAAGAGGCCGTAAGGGCCAAGGAAATTGCTGAAAAGAAAATGCAAAACAAAGATTTCAACGGGGCTCGAAAATTTGTTCTTAAGGCTCAACAACTATATCCTGATTTGGAGAATATTAATCAGATGCTTATTGTCTGTGATGTGCATTGCTTTGCTGATCAGAAATTGTTTGGCAATGAGATGGACTGGTATAAAATTCTTCAAATTGAGCTGACGGCTAATGATGCAACAATTAAGAAGCAATACAGGAAGTTTGCTCTCCAACTTCATCCTGACAAAAACAAGTTTTCTGGTGCAGAAGCGGCATTTAAACTGATTGGGGAAGCTCAAAGAGTTCTTTTAGATGGAGAAAAACGATCTAGGCTTGATATGAATCTGCGCAGGGCTCCAATGAACAGAGCTACCATGCCAACTCATCATCATCAGAATGTTCAGATGAATTTTAATCCTGTGATGCAAACCACTGTCAGACCCAGTTTTACAAACTTAAATCCTCATCAGCAACAACAGTCTAGACAGACATCTCATCAGGGGCCTAATCGTGGCCGCCCTACTTTTTGGACCATGTGCTCACATTGTTCTGTTAGATATGAGTATTTTCTGGAAGTTTTACACAGATCTCTTCGCTGTCAACATTGCAATAGGCCCTTCGTTGCATTTGATATGCAAAGTACAGCACCAACAATTAATTCAACCCAGCAAGCTTTTGGTGCACAAAACCATAGCCAGAATCATGGCGCTTTCAATGTTGGTGTTGGATCTCAAGGTAATGTGCATACTCACAGATCACACACCAAATCACACAAAAAAAAACGCCATACTGTGGATGACCCTGTAAAGCCAAATGGAAAGAGAAGGAGAAAGCGGGTAGCTGAATTCAGTGAAAGTTCTGAATCTGTGGGCAGTACTGATTCTGAATCTGAAGAGGAGATTCGTTTTGACAGTGATGCTGTTCCTGGTTTTTCTACCCACATAGAAAAGAATCCACGTAGATCTACGCGACAAAAGCATCAGGTTTCCTACAAGGAGAATGTGAGTGATGATGAAGGGACTGGATCTCCATTTGGTGCTGGTGAAGAGGAACATGAGGAGGCAGCTAAAATTAATGAACAAAATGGTTCGGCTGCTGATAAAAAAGATCAGCGACAGGTAAAGGGGAAGCAGAACTTTTATTCTGAAGAGAGCGTTCAAAATTTAAAAGAGGAGCTTAAGGAGGTGAGGGAAAAAGAGGCAGTGGGTAGCTCAAACACAGACAAAACTTCAGAGCATTCACCCTTGAAATCAGCAGATCAACCAGTTCAGCTTATTTATCCAGATGCAGAGTTCAGTGACTTTGAAAAAGACAAGAAACAGGAGTCTTTTGCTGCTGGGCAGATTTGGGCTATTTACGATACTGTTGATGGTATGCCTCGATTCTATGCTTTAATCAAAAAAGTTTTCTCTCCTGGATTCAAGTTGCGTATAACATGGTTTGAACCAGACGCAGAAGAGAAAGATGAAATCCACTGGATAAATGAGCAATTGCCAGTTGCTTGTGGGGAACATAGACTTGGTAATACAGAAATTACCGAAGATCCACTGATGTTCTCCCATCTTATTGTTTGTGAAAAGTATGGCCGCAGTAGGTATAAAGTATATCCTAGAAAGGGAGAAACTTGGGCTCTTTTTAAAAATTGGGATATCAAATGGCATATGGATGCGGAGTCTCATAGGCAGTATGATTTTGAATTTGTCGAAATCTTATCAGATTACATTGAAGGTGTGGGAGTAGTTGTTGCATACCTGGGTAAATTGAAAGGTTTTACATCTCTCTTCTCTCAACTGGATGGAGGCAAGCATACCATACAAATTCCATCAGCTGAGTTATTCAGATTTTCTCACAGGGTTCCATCTTTTAAAATGACTGGTCAGGAAAGAGTTGGTGTTCCTGTAGGCTCTTGGGAACTTGATCCTGTATCCCTGCCAAGGAATATTGAGGAAATTGATGTTCCTGGAGATTTGGATATAAATGTGGGACATTGTCCGTCTAGTGGGAATGGCACAAGGTCTTCAGATATGTCGAAATTTGCCAGGGAGGTAGATGCATCTACTGCAAAGCATAATTTGGAAAGAAACAATTCTTCAAAGGAGAACAAGGATCCCGTTGAACATACTGGTAGTAATCTTTCATCCTCAGACGCGGAGGCTTTTGAAATTCCAGATCCCGAGTTCTATAATTTTGATGGTGGGAGGTCCATAGAAAAGTTTCAGGTTGGCCAAATTTGGGCATTTTACGGGGATGAGGATGGACTACCAAAATACTATGGTCAGATTAAGAAGATTAGGATCAGACCAGAACCTGAGTTGCAAGTTACTTATCTTACTAACTGCTGGATACCAGAAAACTGTCTCAGATGGGAAGATAAAGACATGCTTATTTCCATTGGCAGATTTAAAATCAAAACGTGTGCCAGTCCCTACACGTATTCTGACACCCGTTCTATTTCACATCAGGTGCAGACTATTACTAACAGTAAGAAGGAATATGAAATTTTTCCAAGGAAAGGCGAAATTTGGGCATTGTACAAGAATTGGACGACTAAAATAAAACGTTCTGATCTGGCAAATTTGAAGTATGACATAGTGGAAGTTGTTGGAGAAAATGATTTGTGGATGGATGTTGTACCTTTGGAGTTGGTGAGTGGTTATAAGTCAGTTTTTAAGAGCAACTTAAATGCACGATCAGCTAGGACCATGAGAATATTTTGGAAAGAGTTGCTGAGGTTCTCCCACCAAATCCCTGCCTTTAAATTAACAGAAGAACATGGGGGCAATCTGAGAGGCTTCTGGGAGCTTGATCCCGGAGCATTACCCCCATATTATTTTAGCAGCAAATAA 2892 0.407 MECNKEEAVRAKEIAEKKMQNKDFNGARKFVLKAQQLYPDLENINQMLIVCDVHCFADQKLFGNEMDWYKILQIELTANDATIKKQYRKFALQLHPDKNKFSGAEAAFKLIGEAQRVLLDGEKRSRLDMNLRRAPMNRATMPTHHHQNVQMNFNPVMQTTVRPSFTNLNPHQQQQSRQTSHQGPNRGRPTFWTMCSHCSVRYEYFLEVLHRSLRCQHCNRPFVAFDMQSTAPTINSTQQAFGAQNHSQNHGAFNVGVGSQGNVHTHRSHTKSHKKKRHTVDDPVKPNGKRRRKRVAEFSESSESVGSTDSESEEEIRFDSDAVPGFSTHIEKNPRRSTRQKHQVSYKENVSDDEGTGSPFGAGEEEHEEAAKINEQNGSAADKKDQRQVKGKQNFYSEESVQNLKEELKEVREKEAVGSSNTDKTSEHSPLKSADQPVQLIYPDAEFSDFEKDKKQESFAAGQIWAIYDTVDGMPRFYALIKKVFSPGFKLRITWFEPDAEEKDEIHWINEQLPVACGEHRLGNTEITEDPLMFSHLIVCEKYGRSRYKVYPRKGETWALFKNWDIKWHMDAESHRQYDFEFVEILSDYIEGVGVVVAYLGKLKGFTSLFSQLDGGKHTIQIPSAELFRFSHRVPSFKMTGQERVGVPVGSWELDPVSLPRNIEEIDVPGDLDINVGHCPSSGNGTRSSDMSKFAREVDASTAKHNLERNNSSKENKDPVEHTGSNLSSSDAEAFEIPDPEFYNFDGGRSIEKFQVGQIWAFYGDEDGLPKYYGQIKKIRIRPEPELQVTYLTNCWIPENCLRWEDKDMLISIGRFKIKTCASPYTYSDTRSISHQVQTITNSKKEYEIFPRKGEIWALYKNWTTKIKRSDLANLKYDIVEVVGENDLWMDVVPLELVSGYKSVFKSNLNARSARTMRIFWKELLRFSHQIPAFKLTEEHGGNLRGFWELDPGALPPYYFSSK* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1065 963 MobiDBLite consensus disorder prediction 674 731 - -
Vra10g1065 963 PANTHER - 1 961 - -
Vra10g1065 963 MobiDBLite consensus disorder prediction 240 265 - -
Vra10g1065 963 MobiDBLite consensus disorder prediction 692 721 - -
Vra10g1065 963 MobiDBLite consensus disorder prediction 240 435 - -
Vra10g1065 963 MobiDBLite consensus disorder prediction 332 349 - -
Vra10g1065 963 Pfam Domain of unknown function (DUF3444) 733 939 IPR024593 -
Vra10g1065 963 Pfam Domain of unknown function (DUF3444) 440 643 IPR024593 -
Vra10g1065 963 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vra10g1065 963 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vra10g1065 963 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vra10g1065 963 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Vra10g1065 963 CDD DnaJ 67 120 IPR001623 -
Vra10g1065 963 Gene3D DnaJ domain 64 181 IPR036869 -
Vra10g1065 963 MobiDBLite consensus disorder prediction 360 392 - -
Vra10g1065 963 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 961 - -
Vra10g1065 963 MobiDBLite consensus disorder prediction 402 421 - -
Vra10g1065 963 MobiDBLite consensus disorder prediction 277 299 - -
Vra10g1065 963 Pfam DnaJ domain 67 128 IPR001623 -
Vra10g1065 963 SMART dnaj_3 66 123 IPR001623 -
Vra10g1065 963 MobiDBLite consensus disorder prediction 162 188 - -
Vra10g1065 963 SUPERFAMILY Chaperone J-domain 64 151 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1065 Vra-Chr10 16406694 16411823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1065 4 234 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.322 2.27e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1065 - - gmx:100779228 1494.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1065 10 16406694 16411823 Vra10g1065 10 16406694 16411823 ECH
Vra7g2894 7 49066351 49070636 Vra10g1065 10 16406694 16411823 PCT