Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1063 ATGCAAGCTGCTCAATCATCACTCACTGATGAAGCTCCCGAGATTTCCCATCAGGATGTCCCACTGGGAAACAAAGAAGTTTCAGATAGTGGACCCAATGGTAGGCGCCCTGATATTTCACTTCAAGTTCCTCCTAGACCTATAGGGTTTGGGAGCACTAGTGGTGGGAGGGTTCTGGACCATTCTCAAAGTTTCAGCAAAGGGATATCATCATCAAGAGGCTTCTTGCGGGCCTTGAGCTTCAAAAGAAAAGGAAATGTAGGGGATGGGGAAAGAAGCAGCCTACTTAGTTCAGACCCCAAGACAGCTGCAGACAGTTCTAATATGGCCTCCATATCTGAAATTGCATGGAAAAGATGCACTTCTCTTCCTGTTACACCAGCATCAAATCTGTCTCCTTCAGTTGCTACACCCATTTCTGCAAGGACATATAATGAACAAACTAAGCCACATAAAGACGTTGATCGTTCTAAGGTTTCAAGGTCCCTTTCTGTACCTGGACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTAGTGAACAGGAGCAACAAGATCAAAATGAAGATCAAATAACTCCTGTGCCGATAGAAGTTACAGCCGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTTTCGATGTGTGTGATGAAAGGAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATTAAATGGTTTAGCACCAAAAGCGACAAGAAATGTGATGTGTGTAGGCAAGAGGTTCAGAATTTACCTGTAACTTTGCTTCGTGTGACAAGCTCTGTTCAACGACAAAACAGACAGATGCAAGGTCAGCAGAACCTACATCCGGAGTCAATAAGCGCATGGCAAGACTTTGTGGTGCTTGTCCTGATCAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTACTGCTTCCTGAATTGAAGACTCAAGCTATTATTATTGCAGCACCATTTGCCTTTACCTTGGGCCTCCTAGCTTCTATTTTTGCAGTCATTCTGGCAATTAAGGAGTATATATGGACATATGCTGCTCTCGAGTTTGCCCTTGTAGCTTTAACTGTGCATCTATTTTATACAATGTTGCATTTGATGGCCATTTATGCCATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGGCCATCAACTACGCATATATCCAGTTTGTCACCTGGAGGCTTCAAGTCTCTTATGATGATAATCCAGTATGA 1269 0.424 MQAAQSSLTDEAPEISHQDVPLGNKEVSDSGPNGRRPDISLQVPPRPIGFGSTSGGRVLDHSQSFSKGISSSRGFLRALSFKRKGNVGDGERSSLLSSDPKTAADSSNMASISEIAWKRCTSLPVTPASNLSPSVATPISARTYNEQTKPHKDVDRSKVSRSLSVPGRNVVIVRSVSFSTRSEQEQQDQNEDQITPVPIEVTADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLRLVHEECLIKWFSTKSDKKCDVCRQEVQNLPVTLLRVTSSVQRQNRQMQGQQNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVALTVHLFYTMLHLMAIYAILLSSVLGFGIAMAINYAYIQFVTWRLQVSYDDNPV* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1063 422 PANTHER ZINC FINGER PROTEIN 1 422 - -
Vra10g1063 422 ProSiteProfiles Zinc finger RING-type profile. 214 261 IPR001841 -
Vra10g1063 422 MobiDBLite consensus disorder prediction 91 107 - -
Vra10g1063 422 MobiDBLite consensus disorder prediction 86 107 - -
Vra10g1063 422 MobiDBLite consensus disorder prediction 141 161 - -
Vra10g1063 422 Pfam RING-variant domain 214 260 IPR011016 GO:0008270
Vra10g1063 422 MobiDBLite consensus disorder prediction 1 68 - -
Vra10g1063 422 PANTHER OS02G0165000 PROTEIN 1 422 - -
Vra10g1063 422 ProSiteProfiles Zinc finger RING-CH-type profile. 206 267 IPR011016 GO:0008270
Vra10g1063 422 SMART ringv_2 213 261 IPR011016 GO:0008270
Vra10g1063 422 SUPERFAMILY RING/U-box 210 264 - -
Vra10g1063 422 CDD RING_CH-C4HC3_MARCH 214 261 - -
Vra10g1063 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 269 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1063 Vra-Chr10 16387618 16391844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1063 152 321 C3H Transcription Factor Family AT2G37950 26.087 3.31e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1063 - - vun:114188987 773.081