Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1061 ATGGAACCTCAACAATCTCTCCCTCCCATGGACGATTCCGAAGACCCTTCCTCCACTTGGGACTTCTCCTACCTTCTAGACTTCAACCTCGACGAAGACCACACCATTAATTCTCTCCCATTCTCTTCTCCCTTCAACGACACTCCCGAGATCCCTAACGACCGGGTCCGAAAGCGTGATCCCCGACTCACCTGCTCCAACTTTCTCGCGGGTCGGGTCCCCTGCGCCTGCCCCGAACTTGACGCCAAACTCGAGGAGGAGGGTTTGCCTGGCAAGAAACGCCCGCGCACCGCTCGTGCCTCCTCAGCCGCTCGATGCCAGGTCCCTGGTTGTGAGGTCGATATCTCCGAACTCAAAGGTTATCACCGCCGACACAGAGTCTGCCTCCGCTGCGCCAATGCCACCACTGTTGTCCTCCACGGCGAGCCCAAGAGATACTGCCAGCAGTGCGGGAAGTTTCATGTTTTGTCGGATTTCGATGAAGGGAAACGAAGTTGCAGAAGGAAGTTAGAAAGGCATAACACGCGAAGGCGGAGAAAGCCCCTGGTGGAATCCGGAGGAGGTGCTATCGCCGAACTTGAGGCCGTTACTCAGAATGAGGAAAACAATTATGATGCGGTAGCAGGAAAAGATTGTTCAAATTTGAGTAATGAGATCAACAACATAGTAGGGTTGCCAGATCATGGAGATGAACCTGTTCCCATTTTGATATCAGCTCCTGATGCCCAGAATGTTAATAGTGACAGTGTTGTGTCTTTGCCTGTTTCTGGTGAAACTCGAGTGAATAGTGGGAACACTTCTAATTCGCCTTCTTATTGTGACAATAAGAGTGCCTACACGTCTATGTGCCAAACAGGTCGGATTTCGTTTAAGCTTTATGATTGGAATCCAGCAGAATTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGTTATATCCGCCCTGGGTGCACCATTTTGACAAGTTTTATTGCAATGCCTAACATTATGTGGATAAATTTACGGAAAGACTCTTTGGAACATGTGAACAAACTTGTTGCCCCGGGAAAAATGCTATCTGGAAGAGGGACTGCACTAGTTCATCTGAATGACATAGTCTTCCGTGTTATGAAAGATGGAACCTCTGTGACGAAAGTCGAGGTCAACTTGCAGACACCCAGGCTTCATTATGTTCACCCTACATGCTTTGAGGCTGGGAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAATTCCAGCTTCTTGTATCGTTTTCGGGAAAGTATCTGAAATGTGAGTATTGTGTACCGGCCCCACATAACTGGACTGAAGAAAATATTTCTTGCGCTTTTGACAATCAGTTGTACAAGATATATGTCCCTCATACAGAGGAAAGTCTCTCTGGGCCTGCATTTATTGAGGTGGAGAATGAATCCGGTTTATCAAACTTTATTCCTGTACTCATTGCGGATAAAGAAACTTGTTCTGAAATGAAGATACTGCAGCAAAAATTAGATTCATCTCTCCTTTCTAATCAATTCCGGTCTGCATCAGGTGGTTCTATCTGCAGCTCGTGTGAAACATTTACACTTAGCCACACATCATCAGACTTACTTGTAGATGTAGCATGGTTGCTCAAGGACACCACTTCAGAAAATTTTGACAGAGTGATTACAGCTTCACAAATCCAAAGATATTGTCACTTGTTGGATTTTCTGATGTGCAATGAATCAACAGTCATGTTGGAGAAAATATTACCAAATTTGATAATCTTGACAGAAAGCATGAAATCCAATTTTGCGATTAATACGACTAGTGATGTTGATACAAGGCAACTCCTGAATCACATACATAATGCTCAAATTGCCATATTTCAGAAACATCAGAAAAATGGAAGTATTATTGTGCAGCCTGAAATGGAAGGCTTTAAACTTGCTCAGGGTTGCTCTCATGATAACAAGATCTCAGTTGCTATTAACAGTCAGGGTATCCTGTCAAGAGCAGGTGCAAAGTGGGGAGTACTGAAAAATCTAACTTGTAGTGACAAAAATGAAAGAATACCTCTTTTAAAGAGAGATATTATAATGAATGTGGAAGAGTTGCCTGAAATATATGGTCGTGGATGTTTAGGAAGGGGGTTGTTGACCCCTCGACCAGCTATTTTTGTGATGGTTTCCATTGCTGTTTGTCTAGGGGTTTGTGTAGCCGTCCTTCATCCAGGAGGGGTTACTGAGTTAGCAGTATCCGTTAGAAGGTGTTTGTTTAACTATTAG 2295 0.4453 MEPQQSLPPMDDSEDPSSTWDFSYLLDFNLDEDHTINSLPFSSPFNDTPEIPNDRVRKRDPRLTCSNFLAGRVPCACPELDAKLEEEGLPGKKRPRTARASSAARCQVPGCEVDISELKGYHRRHRVCLRCANATTVVLHGEPKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPLVESGGGAIAELEAVTQNEENNYDAVAGKDCSNLSNEINNIVGLPDHGDEPVPILISAPDAQNVNSDSVVSLPVSGETRVNSGNTSNSPSYCDNKSAYTSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTSFIAMPNIMWINLRKDSLEHVNKLVAPGKMLSGRGTALVHLNDIVFRVMKDGTSVTKVEVNLQTPRLHYVHPTCFEAGKPMEFVACGSNLLQPKFQLLVSFSGKYLKCEYCVPAPHNWTEENISCAFDNQLYKIYVPHTEESLSGPAFIEVENESGLSNFIPVLIADKETCSEMKILQQKLDSSLLSNQFRSASGGSICSSCETFTLSHTSSDLLVDVAWLLKDTTSENFDRVITASQIQRYCHLLDFLMCNESTVMLEKILPNLIILTESMKSNFAINTTSDVDTRQLLNHIHNAQIAIFQKHQKNGSIIVQPEMEGFKLAQGCSHDNKISVAINSQGILSRAGAKWGVLKNLTCSDKNERIPLLKRDIIMNVEELPEIYGRGCLGRGLLTPRPAIFVMVSIAVCLGVCVAVLHPGGVTELAVSVRRCLFNY* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1061 764 Pfam SBP domain 106 180 IPR004333 GO:0003677
Vra10g1061 764 ProSiteProfiles Zinc finger SBP-type profile. 103 180 IPR004333 GO:0003677
Vra10g1061 764 Gene3D - 101 167 IPR036893 GO:0003677|GO:0005634
Vra10g1061 764 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 14 762 - -
Vra10g1061 764 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 14 762 IPR044817 GO:0003677
Vra10g1061 764 SUPERFAMILY SBT domain 104 181 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1061 Vra-Chr10 16334423 16344334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1061 8 758 SBP-box Gene Family AT5G18830 45.960 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra10g1061 SBP 1.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1061 - - gmx:100776034 1254.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1061 10 16334423 16344334 Vra10g1061 10 16334423 16344334 ECH