Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1055 ATGAACGATGAACGAGAACCAACAGCTTCCTCGAGAGAATTTTATGTTGGCAGCAATGGCGTCCCCAAGACAGAAAGAAAACAAGTAGTTGAAAGGGATAAATCTATTTTTAGAGGCAGGCGTCCACGAACTGGGTTTTCTGATTCATTCTCAAGTATTGAATTGGAAGCATTAGACAATGAAGAGGGAGGAGCACCTGAGCACTCTCCTAGGAGTCAAGGGTCTGAAACCCCAAGTTCAATAACCAGCACTTCAGATTCGGAGGGTCAGGGGTCTTTAGTAGGCAATTCACCTAATGCTAATAATCAATGGCGTGGTTTCTTCAAGCTACTGAAGAAAGGATCTCAAATGCCTTTCCAAACTTTTCATCCACTTAAAAATGTTCCAAAACTCACAAGAAGAAAAAGCAAGAGAATCAGGGAGGACATGTGTCCATCTTTGAATTCTCCAGCTCTTCGCTCATCTTTTGACAGTGAGTTTGGCTACTTAAAATCTTCATGGAAAAACTTCACTCTCGCAGAGATCATGACTGCAACAAACGACTTTAGCGAAGCTAATTTGATTGGGGAGGGAGGCTATGCGGAGGTTTATTTAGGAAAATTGGAAGATGGAAACTTTGTTGCCATTAAACGGTTGACAAGAGGGAACCAAGAAGAAATGACCGCAGATTTCTTGTCTGAGCTTGGCATTATAGTACATGTGGATCATCCCAATATAGCTAGATTGATTGGATATGGTGTTGAAGGAGGAATGTTTCTCGTTCTTCAATTGTCTCCACATGGTAGCTTGTCATCTATACTTTATGGACCTAGAGAGAAGCTGAATTGGAGCCTCAGATATAAGATTATTTTGGGGACTGCTGAGGGACTCCGCTATCTGCATGAGGGTTGTCAAAGAAGGATCATTCACAAAGACATTAAGGCTTCTAACATTTTGCTCTCAGAGGATTTTGAGCCCCAGATATCTGATTTTGGGCTTGCAAAGTGGTTACCTGACCAATGGACTCATCATACTGTCTCCAAAGTGGAAGGCACATTCGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAAACAGATGTGTATGCTTATGGTGTGCTATTATTGGAGCTCATTACTGGTCGACAAGCTTTGGATAGCTCACAGAGAAGTCTGGTGATGTGGGCAAAACCTCTGCTATCTGCAAATAATATCAAAGCCCTAGTCGATCCAGTTTTGGCTGATGCTTACAATGAAGAGCAGATGGCACTTGTAACCTTAACAGCTTCTCTATGTGTAGACCAGTCTTCGATTCAGCGACCAGATATGAGTCAGGTGTTGGAGATACTAAGAGGGGAAGAAGATATCCTGAGAATCATGAAAGAACGGACCAAGGTAAAACTTCAGAGGACATACTCTGAAGAACTGTTTGATGCAGAAGAGTACAACTCAACCAAGTTTTTGAATGAGAGGGATCGACATATGGAGACTATTCTAGGCTCAGCTACAGACGAATGA 1509 0.4221 MNDEREPTASSREFYVGSNGVPKTERKQVVERDKSIFRGRRPRTGFSDSFSSIELEALDNEEGGAPEHSPRSQGSETPSSITSTSDSEGQGSLVGNSPNANNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDMCPSLNSPALRSSFDSEFGYLKSSWKNFTLAEIMTATNDFSEANLIGEGGYAEVYLGKLEDGNFVAIKRLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSLRYKIILGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQRSLVMWAKPLLSANNIKALVDPVLADAYNEEQMALVTLTASLCVDQSSIQRPDMSQVLEILRGEEDILRIMKERTKVKLQRTYSEELFDAEEYNSTKFLNERDRHMETILGSATDE* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1055 502 MobiDBLite consensus disorder prediction 1 100 - -
Vra10g1055 502 SMART serkin_6 182 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1055 502 MobiDBLite consensus disorder prediction 70 100 - -
Vra10g1055 502 ProSiteProfiles Protein kinase domain profile. 182 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g1055 502 PANTHER OS08G0249100 PROTEIN 40 485 - -
Vra10g1055 502 Gene3D Transferase(Phosphotransferase) domain 1 259 471 - -
Vra10g1055 502 Pfam Protein tyrosine and serine/threonine kinase 186 446 IPR001245 GO:0004672|GO:0006468
Vra10g1055 502 ProSitePatterns Protein kinases ATP-binding region signature. 188 210 IPR017441 GO:0005524
Vra10g1055 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672|GO:0006468
Vra10g1055 502 MobiDBLite consensus disorder prediction 25 41 - -
Vra10g1055 502 Gene3D Phosphorylase Kinase; domain 1 147 256 - -
Vra10g1055 502 SUPERFAMILY Protein kinase-like (PK-like) 163 447 IPR011009 -
Vra10g1055 502 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 40 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1055 Vra-Chr10 16290856 16294574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1055 153 453 Receptor kinase-like Gene Family AT1G53420 40.129 7.77e-71 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vra10g1055 PK_Tyr_Ser-Thr 1.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1055 - - gmx:102670300 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1055 10 16290856 16294574 Vra10g1055 10 16290856 16294574 ECH
Vra10g1055 10 16290856 16294574 Vra10g0600 10 11879547 11885197 ECH
Vra10g1055 10 16290856 16294574 Vra8g1539 8 32326935 32331106 ECH
Vra10g1055 10 16290856 16294574 Vra8g1180 8 26931338 26935148 ECH