Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1045 ATGGGTTGTGTCCATGGCAAGTGCTGTACCCGTTACCCTTCACCGTCAGTGGGTGGCTCCAGGGACTTCAGAGAACTTGGCCCTTATGGTACCCAGAGGAAGCACATTCTCACTCAGAGTTCACTTCAATTTGTTCCCGTTCCTTCCCATAACTTCACTTTGGAATACTCTGTGCTCACTCAGAGAGGGTACTATCCTGATTCACCTGATAAAGAAAACCAGGATAGTTTCTGCATTAGGACACAATTTCAAGGTAACCCAAGTCTCCATTTCTTCGGTGTTTATGATGGGCATGGCGAATTTGGTGCCCAATGTTCGAACTTTGTTAAGGATAGGTTGGTGGAAAATTTGTCAAGTGACTTTGCATTGTTGGAGGACCCTGTCAAGGCTTACACTTCTGCTTTCTTGACCACGAATGAGGACTTGCATAAGAATGAGATTGACGATTCCTTGAGTGGCACCACTGCAATTACGGTGCTGGTCATTGGGGACACCCTTTATGTTGCTAATGTTGGTGATTCGAGAGCAGTGCTAGCTGTTAAGGATGGGAACCGGGTTGTTGCTGAGGACTTGTCCACTGATCAGACACCATTTAGGAGAGATGAGTATGAGAGAGTGAAGCTTTGTGGGGCAAGGGTTTTGAGTGTTGATCAGGTGGAGGGGCATAAGGATCCGGATATTCAGACTTGGGGTGATGAAGAGAGTCAGGGTGATGATCCTCCTAGGTTGTGGGTTCAGAATGGTATGGTGCCTGGAGCTGCATTTACAAGGAGTGTAGGGGATATGTTGGCTGAGACTATCGGTGTAATTGCTGTTCCTGAGGTGTCAACGGTTCAGCTTACACCTAACCATCTTTTCTTTGTTGTTGCAAGTGATGGGGTATTTGAATTCCTATCCAGCCAAACTGTTGTTGATATGGCAGCTAGTTATTCAGATCCCCGTGATGCATGTGCTGCCATTGCTGGAGAGTCATATAAACTATGGTTAGAACACGAGGGCCGAACTGATGATATAACAATTATTATCGTTCAGATCAAAGGCCTGTCTAATTCAGGTACATCTGGACTTGGATCAGGAGAGGTCAATGTCAGCACTGTAACAAGGACCAAGAGCAAGAGGGTAAAGGGAGCATCTGAATTATCTGCCACAACTGGGTTAGATGTTTATCGTTCGGTCAGGAATGGCTTCTCTGATTTACAGTCCTGTCCACAGCATGTGGTCTCAACCAGAAGCCCAGCCATAGTGGTCCCTTCTCCAGCTTGTCCAACATCTGTTACATCGTGA 1284 0.4642 MGCVHGKCCTRYPSPSVGGSRDFRELGPYGTQRKHILTQSSLQFVPVPSHNFTLEYSVLTQRGYYPDSPDKENQDSFCIRTQFQGNPSLHFFGVYDGHGEFGAQCSNFVKDRLVENLSSDFALLEDPVKAYTSAFLTTNEDLHKNEIDDSLSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRVVAEDLSTDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQTWGDEESQGDDPPRLWVQNGMVPGAAFTRSVGDMLAETIGVIAVPEVSTVQLTPNHLFFVVASDGVFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLEHEGRTDDITIIIVQIKGLSNSGTSGLGSGEVNVSTVTRTKSKRVKGASELSATTGLDVYRSVRNGFSDLQSCPQHVVSTRSPAIVVPSPACPTSVTS* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1045 427 Gene3D - 47 347 IPR036457 -
Vra10g1045 427 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 34 420 - -
Vra10g1045 427 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Vra10g1045 427 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Vra10g1045 427 SUPERFAMILY PP2C-like 44 347 IPR036457 -
Vra10g1045 427 CDD PP2Cc 71 345 IPR001932 -
Vra10g1045 427 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 34 420 - -
Vra10g1045 427 Pfam Protein phosphatase 2C 73 320 IPR001932 -
Vra10g1045 427 SMART PP2C_4 51 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1045 Vra-Chr10 16226261 16230573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1045 1 350 PP2C-type Phosphatase Gene Family AT3G06270 72.286 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1045 - - gmx:100777670 809.29