Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1038 ATGGTCCCTAGTACAGTGTTCAAAGTGTTGAAATCTCCAAAAATCGGGATTCTAAAATTAGCGTCACTGCGAGCTTCATTTGTTTCCAGAACCGAAATAACAATGGACCTGCGTGAATCGATCAGCAACCAAACCGATGTTGCCCTCAGCATGACAAAGCTGTTGTTGTCGAAGGAAGCTCGGGACAAGAACTTCGTGTATTCGCCGCTGTCGTTGCACGTTGTTCTCAGCATCATCGCTGCTGGCTCCAAGGGTCCCACACTCGATCAGCTTCTCTCTTTCCTCCGATCCAAGTCCACCNACCATCTCAACTCCTTCGCCTCTCAGCTCGTCACCGTCGTACTCTCCGATGCCTATCCCGCCGGAGGGCCTCGACTCTCCTTCGCCGACGGCGTCTGGGTTGAGCAAACCCTTTCTCTTCTTCCTTCCTTCAAACAGCTTGTCAACACTGATTACAAGGCAACTTTGGCTTCGGTTGATTTCCAGACCAAGGCTGTTGAAGTGGCCAATGAAGTTAATTCTTGGGCCGAAAAGGAGACAAATGGCCTTGTAAAAGAACTTCTTCCTGCTGGATCTGTTNACAGTACAACCAGACTCATCTTTGCAAACGCACTGTACTTCAAAGGAGCGTGGAATGAGAAGTTTCATGCTTCAATTACAAAAAACCATGATTTCCACCTTCTTGATGGCAATTCAGTCAAGGTTCCCTTCATGACTAGCAAGAAGAAGCAGTTCATAAGGCCTTTTNAGGGTTTTAAAGTCCTTGGTCTTCCCTACAAGCAAGGTGAAGATAAACGCCAATTCACCATGTACTTTTTCCTTCCAGATGCAAAAGATGGGCTNCCAGCTTTGGTTGAGAAGTTGGCTTCGGAACCTGGGTTCTTGGAACGCAAGTTTCCTAATTACCAATTGGATGTAGGGGATTTCAGGATCCCAAGATTCAAAATTTCTTTTGGGTTTGAAGCCTCTGATGTGCTGAAGGAACTTGGAGTGGTTTTACCTTTCACTGTTGGAGGTTTGACANAAATGGTGGAGTCTCCTGTGGGTCAAAACCTGTGTGTTTCTGATATATTTCACAAGTCTTTTATTGAAGTAAACGAAGAGGGTACTGAAGCTGCAGCGGCTACTGGAATACTGGTGGGGTGTAGTCGGTCTCCGTCTAAAACTCCGTCTAAAATAGACTTCGTAGCTGACCACCCTTTCTTGTTCCTCATCAGAGAAGATTTAACTGGAACAGTACTCTTTATTGGCCAGGTGCTCGATCCTCGTGTTGGAGGTCACCACCCCAGAACAGAATTGAGTAAAAACAAATCTAGAAGTGACTCAAATGGCCTATTGGTTGAGTCTGAATCTGGAAGGCCTATTAGGATTGCTACATTCAATGTTGCCATGTTTTCACTTGCTCCTGCTGTTTCAGAATTTGATGAATGGGTTGTCTCCAATCATGAGCATGGATCTAAGAAGAAGAATCTCACAAAGGGTGAGTTCCCCAAGAGTATACTGAAGCAATCTCCATTGCATGCCTCTCTGAACAAAGCTCAGAGTCTTTCTGACTCCAACATTCTGCCACGTTCAAATTTGAAGGTTTCTATTAATCTTCCTGAGAATGAGATTTCATTGGCAAATAGTAAAGAGGGCACATCAGATAGAATTATGGGAAATGTGTCTGGCAGGCATCAGGTCCCTGCAAGGTCTCCTGTGTGCTTTCCTTTCATTATGAACTACTGTGAGGGCAGTGAGAGATTCGCAAGCAGCAGAAGCATCCTTGAAGTTCTGAGGGAGATTGATGCTGATGTGATGGCCCTGCAGGATGTGAAAGCAGAAGAAGAGAAGAACATGAAGCCTCTTTCTGATTTAGCAGCTGCCTTGGGGATGAAATATGTGTTTGCTGAGAGTTGGGCTCCAGAATATGGAAATGCCATCTTATCCAAATGGCCAATTAAGAAGTGGAAAGTTCAAAAGATTGCTGATGATAATGATTTCAGGAATGTTTTGAAGGCTACAATTGATGTGCCTTGGGCTGGAGAAATAAATTTGTATTCTACTCAGCTTGACCACTTAGATGAGAATTGGAGAATGAAACAAGTGCAGGAAATATTTCGCTCCAATGACCCTCCCCATATCTTAGCAGGAGGTCTCAATTCGCTATATAGAGCAGATTACTCATCCGAGAGATGGACAGATATTTTTAATTACTATGAGAAACTCGGAAAGCCTAGGCCAAGGTCAGAAGTCATGAACTTCATGAAATCCAAAGGCTATATCGATGCAAAGGATTATGCAGGAGAATGTGAGCCCATTGTTATCATTGCTAAAGGCCAAAATGTGCAGGGGACATGCAAGTATGGCACAAGAGTGGATTACATTCTGGCTTCCCCAAACTCTCCATACAAGTACGTGCCAGGGTCCTACTCAGTGATTTCTTCAAAAGGAACTTCTGATCACCATATAGTGAAAGTGGACATTGTGAGAGTAAATGCATCTGCTCAGAAAAATGTCATGAGACAGTGCAGGAAACTAAAGAGTAAGTTATATTTTAACGGACAAGAAGTTGGGATCATGATTGTAAAGGATCATTTTGTTGGTACTGAGCTTGCAATGACTAATGCTATTGTGGAGGAGGAAATAGACTTTTCTTGTGATCCGTACATAGGGTTGGAATTTGACACAGCAGATGAAGCACTAAAGTTCTACACTTCATATGCAAATCGAACAGGATTTAAAGTTCGGATTGGTCAGCTGTATAGATCAAGAACTGATGGGTCAGTTTCTTCTCGAAGATTTGTGTGCTCAAAGGAGGGACGTCAACTCAGTTCAAGAACAGGCTGTCCAGCATTCATAAGGGTGCAAATAAATGGTTCTGGAAAGTGGGTGATTGATCATTTTCATAAGGACCATAATCACAATCTTGAAATCAGTGGTGAAAACTGTACTCCAACATTGCAACAGAAAGGTGATACAGTTGTGAACTCTCTTACTGAGTTTACTAGGAGGCCAAGGAAGAAATTGCTGGAAGAAGCAGATAATGATTCCTCTTGTCCCTTTGGCATTATTGATTTCAAACGTCTGAGAAAGGAAGAACTTGAAGGACAGCCCAAGACTGAACCATATGTTGGTCAAGAGTTCAGTTCACCTAATGAAGCCTACCAATTTTATCATGCATATGCAGCGCATTTGGGTTTTGGAGTTCGAATTGGTCAATTGTTTCGTTCCAAGAATGATGGATTGATTACATCCCGCCGATTTGTTTGCTCCAAGGAGGGGTTCCAGCATCCTTCAAGAGTTGGTTGTGGGGCTTATTTAAGGATTAAGAGACAGCCGACAGGAAAGTGGACAGTGGACCGTCTCCGAAAGGATCATAACCATGATCTGGACTCTGAAAAAGAGGGCAGGGCAAAAGATATCCATTCTTCTAATATTCTGAATGACGATGCAGATACTGGATTTGTGAACGGTGACTTGTTTAGAATCGATAACTACACTGTCCCTAGAGGAGGTAGGCAAAATCACATTAGAAGTGAGTGGTACAACATTCTTTTAGAGTATTTTCAAACAAGACAGACAGAAGATACTGGATTCTTTTATTCTGTGGAAGTTGACAATGGTAATTGTATGAGCATATTTTGGGCGGATGGCAGATCTAGATATTCATGTAGTCAGTTTGGTGACGTCCTAGCCTTGGACACGTCATACCGAAAAACTGTCTATTTGGTGCCTTTTGCTACTTTTGTTGGGGTCAATCATCACAAGCAACCTGTGCTTCTTGGATGTGCTTTAGTTGCCGATGAATCTGAAGAATCTTTCACTTGGTTGTTTCAGACATGGCTTAGGGCAATGTCTGGCCGGCAGCCTCTGACAGTTATTGCTGATCAAGATATTGCAGTCCAGAGGGCAATAGCAAAAGTCTTTCCTGTAACCTATCATCGGTTTTCTTTGTGGCAAATTAAGGCAAAGGAACAAGAGAACATGGGTCTGATGGGTGATGGCTTTACAAAAGACTATGAAAAGTGTGTTTACCAGAGTCAGACAGTTGATGAATTTGACGCCACATGGAACGTGCTACTCAACAAATATGGATTGAAGGACAATGCTTGGCTAAAAGAGATGTATGAGAAGCGGGCATCTTGGGTTCCGTTGTATTTAAAGGGCACATTTTTTGCTGGCATTCCCATGAATGAAAGCCTTGATTCATTCTTTGGTGCACTTTTAAATGCCCAGACACCTCTCTTGGAGTTCATTCCTCGGTACGAAAGGGGTCTTGAGCGACGCCGCGAGGAAGAAAGAAAAGAGGATTTTAATACTTCTAATTTTCAACCCATTTTGCAAACAAAAGAACCAGTGGAAGAACAATGCAGGAGGCTTTACACTCTTGCTGTATTCAAAGTATTTCAAAAAGAGCTATTGCAGTGCTTTAGCTATCTCGGGTTTAAAATATTTGAGGAAGGGGGTCTGAGCAGATATATGGTGCGAAGGTGTGGAAATGATATGGAGAAACATGTAGTTACATTTAATGCATCAAATCTCAGCATTAGTTGTAGCTGTCAGATGTTTGAGCGCGATGGTGTTCTTTGTAGGCACGTGTTGAGGGTTTTCCAGATATTACAATTAAGAGAAGTTCCTTCTCGCTACATCTTACACCGGTGGACAAGAAATGCTGAGGATGGTGTCTTTCCTGACATAGAATCGTGGAGCAGCTCTCAGGAACTTAAAAATTTGATGCTATGGAGTCTAAGAGAAACTGCATCTAAATACATCGATGCTGGTGCAACATCCATTGAAAAGTATAAACTTGCCTATGAAATTTTGCGAGAGGGTGGGAGAAAGCTTTGTTGGCACAGGTGA 4842 0.4277 MVPSTVFKVLKSPKIGILKLASLRASFVSRTEITMDLRESISNQTDVALSMTKLLLSKEARDKNFVYSPLSLHVVLSIIAAGSKGPTLDQLLSFLRSKSTXHLNSFASQLVTVVLSDAYPAGGPRLSFADGVWVEQTLSLLPSFKQLVNTDYKATLASVDFQTKAVEVANEVNSWAEKETNGLVKELLPAGSVXSTTRLIFANALYFKGAWNEKFHASITKNHDFHLLDGNSVKVPFMTSKKKQFIRPFXGFKVLGLPYKQGEDKRQFTMYFFLPDAKDGLPALVEKLASEPGFLERKFPNYQLDVGDFRIPRFKISFGFEASDVLKELGVVLPFTVGGLTXMVESPVGQNLCVSDIFHKSFIEVNEEGTEAAAATGILVGCSRSPSKTPSKIDFVADHPFLFLIREDLTGTVLFIGQVLDPRVGGHHPRTELSKNKSRSDSNGLLVESESGRPIRIATFNVAMFSLAPAVSEFDEWVVSNHEHGSKKKNLTKGEFPKSILKQSPLHASLNKAQSLSDSNILPRSNLKVSINLPENEISLANSKEGTSDRIMGNVSGRHQVPARSPVCFPFIMNYCEGSERFASSRSILEVLREIDADVMALQDVKAEEEKNMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKKWKVQKIADDNDFRNVLKATIDVPWAGEINLYSTQLDHLDENWRMKQVQEIFRSNDPPHILAGGLNSLYRADYSSERWTDIFNYYEKLGKPRPRSEVMNFMKSKGYIDAKDYAGECEPIVIIAKGQNVQGTCKYGTRVDYILASPNSPYKYVPGSYSVISSKGTSDHHIVKVDIVRVNASAQKNVMRQCRKLKSKLYFNGQEVGIMIVKDHFVGTELAMTNAIVEEEIDFSCDPYIGLEFDTADEALKFYTSYANRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGRQLSSRTGCPAFIRVQINGSGKWVIDHFHKDHNHNLEISGENCTPTLQQKGDTVVNSLTEFTRRPRKKLLEEADNDSSCPFGIIDFKRLRKEELEGQPKTEPYVGQEFSSPNEAYQFYHAYAAHLGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCGAYLRIKRQPTGKWTVDRLRKDHNHDLDSEKEGRAKDIHSSNILNDDADTGFVNGDLFRIDNYTVPRGGRQNHIRSEWYNILLEYFQTRQTEDTGFFYSVEVDNGNCMSIFWADGRSRYSCSQFGDVLALDTSYRKTVYLVPFATFVGVNHHKQPVLLGCALVADESEESFTWLFQTWLRAMSGRQPLTVIADQDIAVQRAIAKVFPVTYHRFSLWQIKAKEQENMGLMGDGFTKDYEKCVYQSQTVDEFDATWNVLLNKYGLKDNAWLKEMYEKRASWVPLYLKGTFFAGIPMNESLDSFFGALLNAQTPLLEFIPRYERGLERRREEERKEDFNTSNFQPILQTKEPVEEQCRRLYTLAVFKVFQKELLQCFSYLGFKIFEEGGLSRYMVRRCGNDMEKHVVTFNASNLSISCSCQMFERDGVLCRHVLRVFQILQLREVPSRYILHRWTRNAEDGVFPDIESWSSSQELKNLMLWSLRETASKYIDAGATSIEKYKLAYEILREGGRKLCWHR* 1614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1038 1613 SUPERFAMILY Serpins 32 422 IPR036186 -
Vra10g1038 1613 Coils Coil 592 612 - -
Vra10g1038 1613 ProSiteProfiles Zinc finger SWIM-type profile. 1499 1535 IPR007527 GO:0008270
Vra10g1038 1613 Gene3D - 211 417 IPR042185 -
Vra10g1038 1613 Gene3D Antithrombin, subunit I, domain 2 62 367 IPR042178 -
Vra10g1038 1613 Pfam Endonuclease/Exonuclease/phosphatase family 581 815 IPR005135 GO:0003824
Vra10g1038 1613 SUPERFAMILY DNase I-like 582 822 IPR036691 -
Vra10g1038 1613 SMART serpin2 49 422 IPR023796 -
Vra10g1038 1613 SMART 26again6 1510 1537 IPR006564 GO:0008270
Vra10g1038 1613 Pfam Serpin (serine protease inhibitor) 43 422 IPR023796 -
Vra10g1038 1613 Gene3D Endonuclease/exonuclease/phosphatase 573 824 IPR036691 -
Vra10g1038 1613 Pfam MULE transposase domain 1224 1317 IPR018289 -
Vra10g1038 1613 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 877 975 - -
Vra10g1038 1613 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 998 1609 - -
Vra10g1038 1613 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 998 1609 IPR031052 GO:0006355
Vra10g1038 1613 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 877 975 IPR031052 GO:0006355
Vra10g1038 1613 ProSitePatterns Serpins signature. 395 405 IPR023795 -
Vra10g1038 1613 CDD serpinP_plants 42 422 - -
Vra10g1038 1613 Pfam FAR1 DNA-binding domain 896 970 IPR004330 -
Vra10g1038 1613 Pfam FAR1 DNA-binding domain 1050 1124 IPR004330 -
Vra10g1038 1613 MobiDBLite consensus disorder prediction 426 446 - -
Vra10g1038 1613 Pfam SWIM zinc finger 1506 1532 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1038 Vra-Chr10 16182588 16193253 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra10g1038 Serpin 1.7e-94 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1038 - - gmx:100816656 1441.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1038 10 16182588 16193253 Vra10g1038 10 16182588 16193253 ECH