Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1025 ATGGTGAGGGTCAGTGTCTTGAATGATGCTCTCAAGAGCATGTACAATGCTGAGAAGAGGGGGAAACGCCAGGTCATGATTAGGCCATCCTCCAAAGTGATCATAAAATTCCTCTTGGTGATGCAAAAGCATGGGTACATTGGAGAGTTTGAGTTTGTTGACGATCACAGATCTGGGAAAATTGTCGTTGAATTGAATGGTAGATTGAACAAATGTGGGGTTATTAGTCCCCGTTTTGATGTGGGTGTCAAAGAGATTGAGGGTTGGACCGCTAGGTTGCTCCCCTCAAGACAGTTTGGGTATATCGTGTTGACTACCTCTGCTGGCATCATGGACCATGAAGAAGCTAGGAGGAAGAATGTTGGTGGGAAAGTGCTTGGTTTCTTTTACTAG 393 0.4504 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1025 130 ProSitePatterns Ribosomal protein S8 signature. 100 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vra10g1025 130 Gene3D - 70 130 - -
Vra10g1025 130 PANTHER OS02G0478600 PROTEIN 1 130 - -
Vra10g1025 130 Hamap 30S ribosomal protein S8 [rpsH]. 2 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vra10g1025 130 Gene3D - 1 69 - -
Vra10g1025 130 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vra10g1025 130 Pfam Ribosomal protein S8 7 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vra10g1025 130 SUPERFAMILY Ribosomal protein S8 4 130 IPR035987 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1025 Vra-Chr10 16000791 16002737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1025 1 130 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 97.692 2.49e-93 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1025 K02957 - zju:107413502 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2927 7 49302873 49304291 Vra10g1025 10 16000791 16002737 PCT