Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1014 ATGAAGATCTCAATATCAGCCTGTGCCTGCAAGCAAGAGCTGCCCCTAGTAAGTTTCCAAAAGGGGCTAACGATGGAGTCGTTGTTTCATCATCGGAGTAAGGACAAGGTGATAATCATAATGGGGGCCACGGGTACCGGCAAGACGAAGTTGGCCGTAGACGTGGCAAAACACTTCCAACCAGCGGAGATAGTGAACTCCGACAAAATGCAAGTGTACAAGGGCCTCGACATCACCACGAACAAGGTCACTGAAGAAGAGTGTCGAGGGGTCCCACATCACCTGCTTGGCACTGTTGACCCTAATATAAATTTCACCGCCAGCGACTTCTGTCGCCACGCCACATCCGCAATTGATTCCATTGTGGAAAGAAATGGCCTACCCATCATTGCTGGAGGCTCCAATTCTTACTTGGACGCACTCGTGAATCACCACGCGGAGTTTCGGTTAAGGTATAAGTGTTGTTTCCTCTGGGTTGACGTCTCTCTCCCCGTGCTCCATTCCTCTCTTCAGGCACGTGTGGACCGCATGATCGACGCCGGTCAAGTCAACGAGGTTAGGGAATTCTTCGATCCTCGCGCCGATTACACCAGAGGGATCCGAAGGGCCATTGGGGTGCCCGAATTCGATGACTTCCTACGCGCTGAAGCTTCTGGAACCGAGGACGAGACAACCATAAAGAGACTTCTGGAGGCTGCCATTGCCAGGATCAAGATCAACAACTGCACGCTCGCCAACCGCCAGATTCAAAAGATTCACCGCCTCCACGGGTTGTGGAAACGGAACATGCACCGCCTCGACGCCACAGAGGTTTTCCTCGGCTCTCGCGACGCCTGGCACGACCACGTGCTCGCCAAGAGCTTGGTCATCCTTCACAAGTTCCTTTTCGAGGAAAAGAAAACGCACGTCCCCGCCGGAATCGTGTCCCCGAAAGACGTAATTGCAGCTGTTTCTGCGCCGTCGGTAGCAATGGCAGCAACCCATTAG 987 0.5339 MKISISACACKQELPLVSFQKGLTMESLFHHRSKDKVIIIMGATGTGKTKLAVDVAKHFQPAEIVNSDKMQVYKGLDITTNKVTEEECRGVPHHLLGTVDPNINFTASDFCRHATSAIDSIVERNGLPIIAGGSNSYLDALVNHHAEFRLRYKCCFLWVDVSLPVLHSSLQARVDRMIDAGQVNEVREFFDPRADYTRGIRRAIGVPEFDDFLRAEASGTEDETTIKRLLEAAIARIKINNCTLANRQIQKIHRLHGLWKRNMHRLDATEVFLGSRDAWHDHVLAKSLVILHKFLFEEKKTHVPAGIVSPKDVIAAVSAPSVAMAATH* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1014 328 Pfam IPP transferase 149 250 - -
Vra10g1014 328 Pfam IPP transferase 71 145 - -
Vra10g1014 328 Gene3D - 34 295 IPR027417 -
Vra10g1014 328 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 26 302 IPR039657 -
Vra10g1014 328 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 263 - -
Vra10g1014 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 190 IPR027417 -
Vra10g1014 328 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 26 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1014 Vra-Chr10 15905136 15906835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1014 151 301 C2H2 Transcription Factor Family AT2G27760 33.898 3.66e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1014 K10760 - gmx:100812928 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1014 10 15905136 15906835 Vra10g1014 10 15905136 15906835 ECH
Vra7g2937 7 49390315 49392386 Vra10g1014 10 15905136 15906835 PCT