Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1009 ATGGGTATCTCATGGAGTGGCAGAAGAAGAAACAATTACATCCAAAATCCACCGCCTCCATTTCCACCTCCCCCTTACTATTACCATCCCCAATCCAACCACCCTCCCCCTCCGCAGCCACCGCAGGGCTACTTCCTCCCTTCCACAACCACTTATGCCCCGCACTGCAACAACTATGCCGCTCCTCCTCCCTTCACTCCACTGCCACAGCCGCCGCCGCCCTATTGCCCCAACCAGAGTGCCTATCCCAACTACGCCAATTCCGTCCCCAGTCACCTTCACTACCAACTTTTCTACCACCCTCAGCCTAGCGCGTGGCCAGGCGCAACTCGCTCCTCTGCCTCCACTCCTCCGCCCTATGTCGATCACCAGGCTGCGAAGAAGATAAGAAATTATGTGAACGTCCACAAAGACACCCTGCGCCTCGAGGTTGACCAGGAAAACCCCGACCATCATCTCATTTCCTTCGTATTCGACGCTGTCTACGATGGCAGCATTACTATCTTCTACTTTGCCAAAGAAGAAGAAAAATGTAGGTTTGTTCCATTGTTTCCTGATGCATTTCAGCCAGTCAGCATACCCTTTCAGAAAGGAGTTGGTCAGACATTTTCCCAGCCTTCGGGAACAGGAATTGACCTAGGCTTCTTTGAGTTAGATGATCTTTCAAAGCCCTCACCTGGAGAAGATGTCTTTCCTCTTGTAATATGTGCTGAAACAAGTTTGAAAACACCCTCAGAAGATCAAACTCCGGGTGATTCCGTGCTAGATGCATCACCTCACATGCAAATAACTCAGGGTGTCTTAGAGAAAAGTAATGGCGCGGGTCCTTTCCTGATAAATGTAGTAAGGCAGATTTTGTGGATTGATGGTGTTCGATATGAGTTGAGAGAATTATATGGAATAGCAAGCTCGTCCGCAGCCGATTTTGAGGACAATGATCCTGGGAAGGAGTGTGTCATATGCCTGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGTGATTGTGCAAAAGCTCTGCGAATTCAATCCAATAAATGCCCTATTTGCCGTCAGTCTATTGAGGAACTCATTGAGATCAAATTAAATAATACCCATCAATGA 1122 0.4813 MGISWSGRRRNNYIQNPPPPFPPPPYYYHPQSNHPPPPQPPQGYFLPSTTTYAPHCNNYAAPPPFTPLPQPPPPYCPNQSAYPNYANSVPSHLHYQLFYHPQPSAWPGATRSSASTPPPYVDHQAAKKIRNYVNVHKDTLRLEVDQENPDHHLISFVFDAVYDGSITIFYFAKEEEKCRFVPLFPDAFQPVSIPFQKGVGQTFSQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETSLKTPSEDQTPGDSVLDASPHMQITQGVLEKSNGAGPFLINVVRQILWIDGVRYELRELYGIASSSAADFEDNDPGKECVICLTEPKDTAVLPCRHMCMCSDCAKALRIQSNKCPICRQSIEELIEIKLNNTHQ* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1009 373 MobiDBLite consensus disorder prediction 15 44 - -
Vra10g1009 373 Pfam Zinc finger, C3HC4 type (RING finger) 316 362 - -
Vra10g1009 373 PANTHER MAHOGUNIN 1 372 IPR045194 GO:0061630
Vra10g1009 373 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 317 357 IPR045195 -
Vra10g1009 373 MobiDBLite consensus disorder prediction 1 47 - -
Vra10g1009 373 SUPERFAMILY RING/U-box 310 363 - -
Vra10g1009 373 SMART ring_2 318 356 IPR001841 -
Vra10g1009 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 367 IPR013083 -
Vra10g1009 373 ProSiteProfiles Zinc finger RING-type profile. 318 357 IPR001841 -
Vra10g1009 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1009 Vra-Chr10 15851319 15855604 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1009 27 373 C3H Transcription Factor Family AT3G06140 49.030 1.70e-97 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1009 - - vra:106775674 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1009 10 15851319 15855604 Vra10g1009 10 15851319 15855604 ECH