Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1008 ATGAAAAGTAAAAAGGGAAAGTGGAAAACTATAGAAATCCGTGGAAAGAACAAAGAACACAAAAGGTTGGTTCTACTTAATTTCCCGCACAACACGCATTCATTCCATTGGGAGCTCTGTTTCATCATCATCATAATCATCATCTCACTGCTTCTGATTCTGAATTCAACCATTCTCATGGGTATCTCATGGAGTAGCAGAAGAAGAAACAATTACATCCAAAACACACCGCCTCCACTCCCACCTCCCCCTTACTATTACCGTCCCCAATTCAACCACCCTCCTCCTCCGCTGCCACCGCAGGGCTACTTTCTCCCTTCCACAACCACTTACTCCCCCCACAACAACAACAACTATGCTGCTCCCCCTCCCTTGGCTCCACCGCCACAGACGGCACAGCCGCCACCGCCGCCGCAGACCCATTCCATCTCCTTCTATCACCCCAACCAGAGTGCCTATACCAACTACGCCAATTCTGCGCCCAATCGCCTTCACTACCAACCTTCATACCACCCTCAGCCTACCGTGTGGCCGGCCGCTACTCGCGCCGCTGCCTCCACTCCTCCGCCCTATGTCGATCACCAGACTGCGAAGAAGATACGAAACTATGTTAACGTCCACAAAGACACCCTGCGCCTCGAGGTTGACCAGGAAAACCCCGATCAGCATCTCATTTCCTTCGTTTTCGATGCTGTCTACGATGGCAGCATTACTGTCTCCTACTTTGCCAAAGAAGAAGAAAAATGTAGGTTTGTTCCATTATTTCCTGATGCTTTTCAGCCAGTCACAATACCCTTTCAGAAAGGAGTCGGCCAGACATTTTCCCAGCCTTCGGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGTCCTCACCTGGAGAAGATGTCTTTCCTCTAGTTATATGTGCCGAAACAAGTTTGAAAACACCCTCGGAAGATGAAACTCCAGGTGATTCTGTTCTAGATGCATCACCTCACATGCAAATAACTCAAGGTGTCTTGGAGAAAAGTAATGGTGCTGGTTCTTTCCATATAAAAGTAGTAAGGCAGATTTTGTGGATTGATGGTGTTAGATATGAGTTGAGAGAGTTATATGGAATAGCAAGCTCACCTGCAGCTGATTTTGACGACAATGATCCCGGGAAGGAGTGTGTCATATGCATGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTATGTGCGGTGACTGTACAAAAGATTTGCGACTTCAATCCAATAAATGCCCTATATGCCGGCAGTCTATCGAGGAACTTATACAGATCAAAGTAAACAATGACAATCAATGA 1335 0.4674 MKSKKGKWKTIEIRGKNKEHKRLVLLNFPHNTHSFHWELCFIIIIIIISLLLILNSTILMGISWSSRRRNNYIQNTPPPLPPPPYYYRPQFNHPPPPLPPQGYFLPSTTTYSPHNNNNYAAPPPLAPPPQTAQPPPPPQTHSISFYHPNQSAYTNYANSAPNRLHYQPSYHPQPTVWPAATRAAASTPPPYVDHQTAKKIRNYVNVHKDTLRLEVDQENPDQHLISFVFDAVYDGSITVSYFAKEEEKCRFVPLFPDAFQPVTIPFQKGVGQTFSQPSGTGIDLGFFELDDLSKSSPGEDVFPLVICAETSLKTPSEDETPGDSVLDASPHMQITQGVLEKSNGAGSFHIKVVRQILWIDGVRYELRELYGIASSPAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCGDCTKDLRLQSNKCPICRQSIEELIQIKVNNDNQ* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1008 444 MobiDBLite consensus disorder prediction 120 142 - -
Vra10g1008 444 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 60 443 - -
Vra10g1008 444 SUPERFAMILY RING/U-box 381 434 - -
Vra10g1008 444 Pfam Zinc finger, C3HC4 type (RING finger) 387 433 - -
Vra10g1008 444 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 388 428 IPR045195 -
Vra10g1008 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 438 IPR013083 -
Vra10g1008 444 ProSiteProfiles Zinc finger RING-type profile. 389 428 IPR001841 -
Vra10g1008 444 MobiDBLite consensus disorder prediction 114 146 - -
Vra10g1008 444 SMART ring_2 389 427 IPR001841 -
Vra10g1008 444 PANTHER MAHOGUNIN 60 443 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1008 Vra-Chr10 15844190 15847855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1008 191 444 C3H Transcription Factor Family AT3G06140 60.784 1.67e-104 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1008 - - vra:106775674 838.18