Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1006 ATGTCTCACATAGCTGTCGAGAGGAACCGAAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGATCGTTGACCCCTTGTTTCTATATCAAAAGGGGAGATCAAGCATCTATAATAGGGGGTGTCATAGAATTCATCAAGGAGTTACACCAAGTTCTTCAGGCTTTGGAGTCCCAGAAAAGAAGAAAGAGTTTAAGCCCTAGCCCTGGTCCGAGTCCACGAACACTTCACCCAAATTTTCATCAACTTGATAGCTCCTCCATAGTTGGGTCCAATTCTTTCAAGGAACTGGGAGCAAGCTGCAACTCTTCTGTTGCGGATGTTGAAGTCAAAATCTCTGGTTCAAATGTCATCTTGAAAGTCATCTCCCAAAGAATTCCGGGTCAAGTTTCAAGGATCATAACTGTTTTGGAAACTCTTTCCTTTGAAGTTCTTCATCTCAACATCAGCAGCATGGAGGAGACTGTCCTTTACCAGTTTCTCGTCAAGATAGAACTGGGATGTCAACTAAGTCTGGAGGAACTAGCAATGGAAGTGCAACAAAGCTTCTGCTCAGAGGCTATAACTATGCTGTGA 576 0.4271 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPRTLHPNFHQLDSSSIVGSNSFKELGASCNSSVADVEVKISGSNVILKVISQRIPGQVSRIITVLETLSFEVLHLNISSMEETVLYQFLVKIELGCQLSLEELAMEVQQSFCSEAITML* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1006 191 PANTHER TRANSCRIPTION FACTOR MUTE 1 189 - -
Vra10g1006 191 SMART finulus 4 55 IPR011598 GO:0046983
Vra10g1006 191 Gene3D - 1 64 IPR036638 GO:0046983
Vra10g1006 191 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Vra10g1006 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 69 IPR036638 GO:0046983
Vra10g1006 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Vra10g1006 191 PANTHER TRANSCRIPTION FACTOR FAMA 1 189 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1006 Vra-Chr10 15806797 15808610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1006 1 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 64.824 1.17e-84 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra10g1006 HLH 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1006 - - gmx:100810771 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1006 10 15806797 15808610 Vra10g1006 10 15806797 15808610 ECH