Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1000 CAGCAACGACAGGATCAGTTGGAGGAAAAAGTCAAGAGCTTTTGGGCACAACAACTGAAGGAAATTGAGGAGAGCACTGATTTGAGGAATCAACACATGTTGCCTCTGTCGAGGGTTAAGAAGATCATGAAGAGTGATGAGGATGTGAAGTTGGTTTCAGCTGAGGCTCCTGTGGTGTTTGCCAAGGCCTGTGAACTGTTCATAATGGAGCTCACAATGAAAGCTTGGGCTAACACCGAGGCCAACAATAGGAGGACAATCAAGAAGTCTGACATTGCATCTGCAATTGCAAGGACTGATGTGTTTGATTTTCTTGAGGATATTGCTCCCATTCCTAGGAATCACAAAAACACAATGATGCATCCATTGCTTCCAGGCAATGCTCCAACACCAACTCAGAATGTTCCTTATATGCCACCTCCTCAACATGTTGCTGCTAAAATTCCTCAGGCGCTGCAAACCTATCCTCTCGCTCCAAGTTCAACTGTCCCCCCCAATCACCAAAACCCTTCTCCTACTTCAGATGATTGA 531 0.4557 QQRQDQLEEKVKSFWAQQLKEIEESTDLRNQHMLPLSRVKKIMKSDEDVKLVSAEAPVVFAKACELFIMELTMKAWANTEANNRRTIKKSDIASAIARTDVFDFLEDIAPIPRNHKNTMMHPLLPGNAPTPTQNVPYMPPPQHVAAKIPQALQTYPLAPSSTVPPNHQNPSPTSDD* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1000 176 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 34 96 IPR003958 -
Vra10g1000 176 Gene3D Histone, subunit A 1 111 IPR009072 GO:0046982
Vra10g1000 176 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 2 168 - -
Vra10g1000 176 MobiDBLite consensus disorder prediction 154 176 - -
Vra10g1000 176 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 2 168 IPR027170 GO:0003700|GO:0006355|GO:0016602
Vra10g1000 176 SUPERFAMILY Histone-fold 13 105 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1000 Vra-Chr10 15737383 15737913 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1000 11 137 CCAAT-HAP5 Transcription Factor Family AT1G56170 56.693 1.89e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vra10g1000 CBFD_NFYB_HMF 2.2e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1000 K08066 - gmx:100807580 174.866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1000 10 15737383 15737913 Vra10g1000 10 15737383 15737913 ECH