Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra10g0999 | ATGGATCAAAACCAGCAAGGTGAAGCAGGAAAAAGAATTGGTGCAGATGGAGGCAAGAAATTGACAGCTGGTGTTGTTCCTGTAGCTTCACCCTATGCTGGAGGGTATCGCTATGATCGGCAATGCATATACCAGCGGCAGCAAGAAAAGTTGCAGCAACGGGTAAAAACCTTCTGGGAAAGACAGATGAAGGAAATTAAAGAGAGCAGTGATTTGAAGAGTAACAGCTTGCCTCTTTCGAGGATTAAGAAGATCATGAAGTTTGATGAGGATGTGAAGATGGTATCAAGTGAGGCTACTATGCTGTTAGGCAAGGCCTGTGAACTGTTCATAATGGAGCTCACAATGAGGTCTTGGGCTCACGTGGAGGATGACAAAAGGAAGATAATCAAGAAGACTGATGTTGCATCTGCAATCTCAATGAATGATATGTTTGATTTTCTTGTTGATGTTCTTCCCAGGGATGACACAGTCCCAGTCATGCTGGGACACCAAGTGCTTCCACCGCCAAATCAGAATGCTCCTTACCCTTATATGTCACTTCCACCACCACCACCACCACCACCACCACCGTATGCTGCTCCGACAACCGCTCCTGGGAATGCTTCTTCTTCATCCGCTGCAAATCCATCCTATTTCAACTTCAATCCCACCCCAGATGAACAAGACCCTTCCAATTTCAATGATCATTAA | 693 | 0.4545 | MDQNQQGEAGKRIGADGGKKLTAGVVPVASPYAGGYRYDRQCIYQRQQEKLQQRVKTFWERQMKEIKESSDLKSNSLPLSRIKKIMKFDEDVKMVSSEATMLLGKACELFIMELTMRSWAHVEDDKRKIIKKTDVASAISMNDMFDFLVDVLPRDDTVPVMLGHQVLPPPNQNAPYPYMSLPPPPPPPPPPYAAPTTAPGNASSSSAANPSYFNFNPTPDEQDPSNFNDH* | 231 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra10g0999 | 230 | MobiDBLite | consensus disorder prediction | 173 | 230 | - | - | |
Vra10g0999 | 230 | MobiDBLite | consensus disorder prediction | 197 | 223 | - | - | |
Vra10g0999 | 230 | SUPERFAMILY | Histone-fold | 46 | 148 | IPR009072 | GO:0046982 | |
Vra10g0999 | 230 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 76 | 139 | IPR003958 | - | |
Vra10g0999 | 230 | MobiDBLite | consensus disorder prediction | 173 | 196 | - | - | |
Vra10g0999 | 230 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 41 | 195 | - | - | |
Vra10g0999 | 230 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA | 41 | 195 | IPR027170 | GO:0003700|GO:0006355|GO:0016602 | |
Vra10g0999 | 230 | Gene3D | Histone, subunit A | 38 | 154 | IPR009072 | GO:0046982 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra10g0999 | Vra-Chr10 | 15732426 | 15733118 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra10g0999 | 57 | 226 | CCAAT-HAP5 Transcription Factor Family | AT1G54830 | 45.455 | 2.84e-47 | 154 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YC | Vra10g0999 | CBFD_NFYB_HMF | 3e-16 | CL0012 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra10g0999 | K08066 | - | mnt:21390755 | 161.384 |