Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0999 ATGGATCAAAACCAGCAAGGTGAAGCAGGAAAAAGAATTGGTGCAGATGGAGGCAAGAAATTGACAGCTGGTGTTGTTCCTGTAGCTTCACCCTATGCTGGAGGGTATCGCTATGATCGGCAATGCATATACCAGCGGCAGCAAGAAAAGTTGCAGCAACGGGTAAAAACCTTCTGGGAAAGACAGATGAAGGAAATTAAAGAGAGCAGTGATTTGAAGAGTAACAGCTTGCCTCTTTCGAGGATTAAGAAGATCATGAAGTTTGATGAGGATGTGAAGATGGTATCAAGTGAGGCTACTATGCTGTTAGGCAAGGCCTGTGAACTGTTCATAATGGAGCTCACAATGAGGTCTTGGGCTCACGTGGAGGATGACAAAAGGAAGATAATCAAGAAGACTGATGTTGCATCTGCAATCTCAATGAATGATATGTTTGATTTTCTTGTTGATGTTCTTCCCAGGGATGACACAGTCCCAGTCATGCTGGGACACCAAGTGCTTCCACCGCCAAATCAGAATGCTCCTTACCCTTATATGTCACTTCCACCACCACCACCACCACCACCACCACCGTATGCTGCTCCGACAACCGCTCCTGGGAATGCTTCTTCTTCATCCGCTGCAAATCCATCCTATTTCAACTTCAATCCCACCCCAGATGAACAAGACCCTTCCAATTTCAATGATCATTAA 693 0.4545 MDQNQQGEAGKRIGADGGKKLTAGVVPVASPYAGGYRYDRQCIYQRQQEKLQQRVKTFWERQMKEIKESSDLKSNSLPLSRIKKIMKFDEDVKMVSSEATMLLGKACELFIMELTMRSWAHVEDDKRKIIKKTDVASAISMNDMFDFLVDVLPRDDTVPVMLGHQVLPPPNQNAPYPYMSLPPPPPPPPPPYAAPTTAPGNASSSSAANPSYFNFNPTPDEQDPSNFNDH* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0999 230 MobiDBLite consensus disorder prediction 173 230 - -
Vra10g0999 230 MobiDBLite consensus disorder prediction 197 223 - -
Vra10g0999 230 SUPERFAMILY Histone-fold 46 148 IPR009072 GO:0046982
Vra10g0999 230 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 76 139 IPR003958 -
Vra10g0999 230 MobiDBLite consensus disorder prediction 173 196 - -
Vra10g0999 230 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 41 195 - -
Vra10g0999 230 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 41 195 IPR027170 GO:0003700|GO:0006355|GO:0016602
Vra10g0999 230 Gene3D Histone, subunit A 38 154 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0999 Vra-Chr10 15732426 15733118 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0999 57 226 CCAAT-HAP5 Transcription Factor Family AT1G54830 45.455 2.84e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vra10g0999 CBFD_NFYB_HMF 3e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0999 K08066 - mnt:21390755 161.384