Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0998 ATGGATGAAAAGAAGCATGATCAAGCAGCAAAAGAAGGATGCGACAAGAGCAAAGTTCAATCTGACCCCAAGATGGATCCTCCTACCAGTCCTCTAGCTCTCACCATTGGTCCCTCTGCCTCTTCATCAAACCCACAGCCACCAAAAGAACCACTGGAGCAGCAACTCAGCAAGTTCTGGGCAAAACAGCACCAGGAAGTTGAGGAGACCAGTGAGTCCAGGAATCACTGCTTACCATTGGCTAGGATCAAGAAGATAATGAAGTCTGATGAGGATGTGAGAATGGTATCAGCTGAGGCTCCTGTGCTGTTGGCCAAGGCTTGTGAGATGTTCATCATGGAGCTCACAATGAGGGCATGGGCTAATGTTGAGGAGAACAAGAGGAGGACACTTAGTAAGAATGACATTGCAGCAGCGATGTCAAAGACTGACATGTATGATTTTCTTGTTGATATTGTTCCCAGGGAAGAGACAAGGGGTCCTCAAGTGTTTGCAGGTCAACAGTCTGGTGCTCCAACAATGCTCATGGGAATGCCCCTTCTTGATCCAACTGATCCTGAGCAGCTGCAAGACCGGCCTTCTCCAACTCCAATGTTGCCAATCCCCGAAGAAGAGGACAACCCTTCTCCTGATTCAGATGACTGA 645 0.4837 MDEKKHDQAAKEGCDKSKVQSDPKMDPPTSPLALTIGPSASSSNPQPPKEPLEQQLSKFWAKQHQEVEETSESRNHCLPLARIKKIMKSDEDVRMVSAEAPVLLAKACEMFIMELTMRAWANVEENKRRTLSKNDIAAAMSKTDMYDFLVDIVPREETRGPQVFAGQQSGAPTMLMGMPLLDPTDPEQLQDRPSPTPMLPIPEEEDNPSPDSDD* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0998 214 Gene3D Histone, subunit A 42 155 IPR009072 GO:0046982
Vra10g0998 214 MobiDBLite consensus disorder prediction 1 73 - -
Vra10g0998 214 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 30 171 IPR027170 GO:0003700|GO:0006355|GO:0016602
Vra10g0998 214 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 78 140 IPR003958 -
Vra10g0998 214 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 30 171 - -
Vra10g0998 214 MobiDBLite consensus disorder prediction 34 51 - -
Vra10g0998 214 MobiDBLite consensus disorder prediction 165 214 - -
Vra10g0998 214 MobiDBLite consensus disorder prediction 1 22 - -
Vra10g0998 214 SUPERFAMILY Histone-fold 56 149 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0998 Vra-Chr10 15723204 15723998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0998 56 159 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.115 2.46e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vra10g0998 CBFD_NFYB_HMF 5e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0998 K08066 - var:108342662 280.026