Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0992 ATGGAAAACTTCACCTCTTCTTCTTCTCTGTCACCCTTTCCATCCATATCAGCTCCATCTTCTTCTGCACTTTTCGACGACTCTTTCGAAGACTCCTGCAGTATATGCCTAGAGTCCTTCACCATTCATGAACCATCCACTGTTACTCGTTGCAAACATGAATATCATCTGCATTGCATTCTTGAGTGGTCACAAAGAAGCCAAGAATGCCCAATTTGTTGGCAATCCCTTGCTTTGAAAGACCCTGCCAGCCAAGAGCTTCTAGCTGCAGTTGAAGATGAAAAACGCTTGAGATCAAGAAAGGCTGCTACTTTTCGTACCCGTCTTGAACAGTATGCCTATGAGGATGACTTGTTCTCAGACGACTCTGATTCTGATGACCAGATTATGAGGCGCCTAGTTGCTGCTGCAAATAGAGTCCGTCGTGTTCATAGACAGGAAAGGAACAGATCACCTGGTGCTGGTCCATCAGATGTTCTTGATATTAACTCTTCCATACATGTATCTGAGTTGCAAACAACACTAACAACTTCACCATCCGAGGGTAGTTTGCCTGCCTCGGCAGTAACATCTACACTTAATAGTCAACCTCCGGTATCAAACACTACACCCGAAAGTGCAAGCCGACCAAACACTTATGAGATGTTTTCCTTCTCAGAATCATTCAAATCCAAATTTTCTGCTGCTTCAACCAGATATAAGGAATCAATTTCTAAAGGTACACGGGGCCTCAAAGAGAAGTTACTTGCCCATAATGTCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCCGGAGTTGCACGGATGATTGAACGCCTTGATCTTTCAAAACGGTCCAATTCTCCTATCATTCCAATCCATAGTGAGGGAACTTCAGACTTCCCAAATGAAGGGAAGAAGTATGCTGGAGAGAATGGCATTGGGGGTTCTCCAAGTAAAGAGAGTGAAGGTGCAGTTCATGATGTTAGTTCAGATGTCCCATTTGTCACTGGCGTGCAATCTTTTGGTCCAGGGTGGAAACGATAA 1047 0.4422 MENFTSSSSLSPFPSISAPSSSALFDDSFEDSCSICLESFTIHEPSTVTRCKHEYHLHCILEWSQRSQECPICWQSLALKDPASQELLAAVEDEKRLRSRKAATFRTRLEQYAYEDDLFSDDSDSDDQIMRRLVAAANRVRRVHRQERNRSPGAGPSDVLDINSSIHVSELQTTLTTSPSEGSLPASAVTSTLNSQPPVSNTTPESASRPNTYEMFSFSESFKSKFSAASTRYKESISKGTRGLKEKLLAHNVSVKELSKGVQREMNAGIAGVARMIERLDLSKRSNSPIIPIHSEGTSDFPNEGKKYAGENGIGGSPSKESEGAVHDVSSDVPFVTGVQSFGPGWKR* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0992 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 105 IPR013083 -
Vra10g0992 348 Pfam Ring finger domain 31 73 IPR001841 -
Vra10g0992 348 MobiDBLite consensus disorder prediction 162 210 - -
Vra10g0992 348 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 335 - -
Vra10g0992 348 SMART ring_2 33 73 IPR001841 -
Vra10g0992 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 335 - -
Vra10g0992 348 MobiDBLite consensus disorder prediction 142 210 - -
Vra10g0992 348 MobiDBLite consensus disorder prediction 291 332 - -
Vra10g0992 348 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Vra10g0992 348 SUPERFAMILY RING/U-box 30 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0992 Vra-Chr10 15679843 15682796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0992 2 81 C3H Transcription Factor Family AT4G00335 39.506 1.74e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0992 K19043 - gmx:100805449 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0992 10 15679843 15682796 Vra10g0992 10 15679843 15682796 ECH