Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0985 ATGAGTTGCTTCCCATGCTGCAAAACAGACACCAAACCAGCCTCTAAAGGGGCAGTCTCCGGCAAAGTTTCCAAAGGAAGAAGAACATTCAAATCAGTAGCTGCAGCTATGTCTCTCAAAACAGGCAGCAGCAGGAACAGACAAATAGACGCAGAGATAAGAAAATTTGGACGTGTAAAAAATGATGTCAAAGTATTCACATATGCACAGCTTCTTGAAGCAACAAACAACTTCAGTTCTGATTGCCTGATCGGTGAAGGTGGATTTGGGAATGTTTACAAAGGATACATGAAAAGTGTTGAACAAACTGTAGCTGTGAAGGTACTGAACAGGGACGGAGCACAAGGAACACGAGAATTTTTTGCAGAAATTTTGATGTTAAGTATGGTTCAACACCCAAACCTTGTGAGGCTCATCGGCTATTGTGCAGATGACCAATATAGGATTTTGGTTTATGAATTCCTGGGCAATGGGAGTTTGGAAAATCACCTTCTAGACTTAGGTGAAGGTAAGGAGCCTTTAGATTGGAAGACCAGAATGAAAATAGCAGAGGGAGCAGCTAAAGGACTTGAATATTTGCATAACAGTGAAGATATACCTATCATATACCGTGATTTCAAATCATCTAATATACTGTTAGATGATAACTTTAATGCAAAGCTGTCTGATTTTGGGCTGGCTAAGATTGGTCCTAAAGAAGGGCAGGAGCAAGTGACAAGCAGGGTGATGGGAACTTTTGGTTATTGTGCACCAGAGTATGCTGCTAGAGGTCAACTCAGCACAAAGTCGGATATTTATAGTTTTGGGGTTGTGTTTTTGGAAATAATATCGGGTAGGAGAGTATTTGACACTTCAAGAGCTACAGAAGAGCAAAATTTGATTGATTGGGCACAACCTTTGTTTAAGGACAGAACGAAGTTTACTCTAATGGCTGATCCTTTGCTTAAAGGTCAGTTCCCCGTGAAGGGTCTATTTCAAGCCCTTGCAGTGGCAGCAATGTGTTTACAAGAGGAACCTGAAACACGACCTTACATGGACGATGTTGTGACGGCTCTTGCACATTTAGCAGTGCACAAAGTTGGAGACCAAGACATAGCCGGAGACTCTATAAAATGTGCAGGCCATGTTGAATCTTTCAGAGTTCTAAGTTCTGCTGGATCCGAAAGGACGTAG 1173 0.4186 MSCFPCCKTDTKPASKGAVSGKVSKGRRTFKSVAAAMSLKTGSSRNRQIDAEIRKFGRVKNDVKVFTYAQLLEATNNFSSDCLIGEGGFGNVYKGYMKSVEQTVAVKVLNRDGAQGTREFFAEILMLSMVQHPNLVRLIGYCADDQYRILVYEFLGNGSLENHLLDLGEGKEPLDWKTRMKIAEGAAKGLEYLHNSEDIPIIYRDFKSSNILLDDNFNAKLSDFGLAKIGPKEGQEQVTSRVMGTFGYCAPEYAARGQLSTKSDIYSFGVVFLEIISGRRVFDTSRATEEQNLIDWAQPLFKDRTKFTLMADPLLKGQFPVKGLFQALAVAAMCLQEEPETRPYMDDVVTALAHLAVHKVGDQDIAGDSIKCAGHVESFRVLSSAGSERT* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0985 390 Gene3D Transferase(Phosphotransferase) domain 1 155 370 - -
Vra10g0985 390 CDD STKc_IRAK 84 352 - -
Vra10g0985 390 ProSiteProfiles Protein kinase domain profile. 78 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0985 390 Gene3D Phosphorylase Kinase; domain 1 21 154 - -
Vra10g0985 390 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Vra10g0985 390 Pfam Protein kinase domain 82 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0985 390 PANTHER OS07G0668900 PROTEIN 1 389 - -
Vra10g0985 390 SUPERFAMILY Protein kinase-like (PK-like) 62 350 IPR011009 -
Vra10g0985 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vra10g0985 390 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0985 Vra-Chr10 15602517 15605161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0985 1 361 Glycoside Hydrolase AT3G07070 52.547 1.92e-134 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vra10g0985 Pkinase 4.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0985 - - var:108343506 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0985 10 15602517 15605161 Vra10g0985 10 15602517 15605161 ECH