Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0980 CCCTACGTCATGATGCCGCCGCAGCCCCAGGCGCCTCCGCCCATGTGGGCCCCCTCGTCCCAGCCTTCGTCGCAGCAGCAGCCAGCCAGCGTTGACGAGGTCCGGACCCTGTGGATCGGCGATTTGCAGTACTGGATGGATGAAAACTATCTCTACACCTGCTTTGCACCTACCGGCGAGGTTACATCTGTCAAAGTGATTCGAAATAAGCAAACTAGTCAATCAGAAGGCTACGGGTTTATTGAATTTAATAGTCGTGCTTCAGCCGAGAGAATCCTTCAAACATATAATGGGGCTATTATGCCAAATGGGGGACAGAGTTTCAGGTTGAATTGGGCAAGTTTTAGTGCTGGTGAAAGGCGCCATGATGATTCCCCTGATTACACAATATTTGTTGGCGACTTGGCTGCAGATGTTACTGATTACTTGCTCCAAGAGACATTTAGGGCTCGTTACAATTCCGTGAAGGGTGCAAAAGTTGTTATTGATAGGCTAACTGGTCGGACCAAGGGGTATGGCTTTGTTAGGTTTGCGGATGAGAGTGAACAAGTGAGGGCTATGACTGAGATGCAGGGGGTTCTTTGCTCAACGAGACCCATGAGAATTGGGCCAGCCAGTAACAAAACCCCTGCTACTCAGCCGAAAGCATCATATCAGAATTCTCAAGGTCAAGGCACACAGAACGAGAATGATCCTAATAATACAACTATTTTTGTGGGCAATTTGGACGCCAATGTTAGCGATGATCATTTGAGACAAGTTTTTAGCCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCAGGCAAGCGATGTGGTTTTGTCCAATTCTCTGACAGGAACTGTGCTGAAGAGGCACTTCGGATGCTAAATGGGACACTACTGGGTGGACAAAATGTTCGTCTGTCATGGGGACGCAGTCCTTCAAACAAACAGGCTCAGGCAGATCCAAACCAGTGGAATGGCGGTGGTGGATACTATGGGTATGCACAAGGTTATGAAAACTATGGTTATGCTCCTGCTGGTCAGGATCCTAACGTGTATGGCAGTTATCCGGGGTATCCTGGTTACCAACCTCCTCAGCAACAGCAGCAAATAGGATACAGTTGA 1110 0.482 PYVMMPPQPQAPPPMWAPSSQPSSQQQPASVDEVRTLWIGDLQYWMDENYLYTCFAPTGEVTSVKVIRNKQTSQSEGYGFIEFNSRASAERILQTYNGAIMPNGGQSFRLNWASFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKTPATQPKASYQNSQGQGTQNENDPNNTTIFVGNLDANVSDDHLRQVFSQYGELVHVKIPAGKRCGFVQFSDRNCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQAQADPNQWNGGGGYYGYAQGYENYGYAPAGQDPNVYGSYPGYPGYQPPQQQQQIGYS* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0980 369 Gene3D - 115 213 IPR012677 -
Vra10g0980 369 CDD RRM2_SECp43_like 127 206 - -
Vra10g0980 369 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 14 366 - -
Vra10g0980 369 SUPERFAMILY RNA-binding domain, RBD 15 113 IPR035979 GO:0003676
Vra10g0980 369 MobiDBLite consensus disorder prediction 349 369 - -
Vra10g0980 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 207 IPR000504 GO:0003723
Vra10g0980 369 SUPERFAMILY RNA-binding domain, RBD 222 332 IPR035979 GO:0003676
Vra10g0980 369 SMART rrm1_1 236 303 IPR000504 GO:0003723
Vra10g0980 369 SMART rrm1_1 129 203 IPR000504 GO:0003723
Vra10g0980 369 SMART rrm1_1 36 111 IPR000504 GO:0003723
Vra10g0980 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 307 IPR000504 GO:0003723
Vra10g0980 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 115 IPR000504 GO:0003723
Vra10g0980 369 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 14 366 - -
Vra10g0980 369 MobiDBLite consensus disorder prediction 1 19 - -
Vra10g0980 369 SUPERFAMILY RNA-binding domain, RBD 114 225 IPR035979 GO:0003676
Vra10g0980 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 102 IPR000504 GO:0003723
Vra10g0980 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 300 IPR000504 GO:0003723
Vra10g0980 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 193 IPR000504 GO:0003723
Vra10g0980 369 MobiDBLite consensus disorder prediction 202 237 - -
Vra10g0980 369 MobiDBLite consensus disorder prediction 1 31 - -
Vra10g0980 369 MobiDBLite consensus disorder prediction 199 237 - -
Vra10g0980 369 CDD RRM3_NGR1_NAM8_like 234 305 - -
Vra10g0980 369 Gene3D - 214 316 IPR012677 -
Vra10g0980 369 CDD RRM1_SECp43_like 36 116 - -
Vra10g0980 369 Gene3D - 34 114 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0980 Vra-Chr10 15575279 15578953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0980 34 314 Eukaryotic Initiation Factors Gene Family AT2G23350 27.622 2.77e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0980 - - gmx:100801562 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3079 7 50483462 50487776 Vra10g0980 10 15575279 15578953 PCT